Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq82145 197 3e-45 seq10922 158 2e-33 seq10127 156 8e-33 seq43370 129 1e-24 seq76450 87.8 4e-12 >seq82145 Length=1636 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||| | || || |||| ||||||||||| ||||||||||||||||| Sbjct 1397 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGAC 1338 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||||| | |||||| |||||||| || | | |||||||||||| || Sbjct 1337 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 1278 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| |||||||| || ||||| ||||||||||| ||||| ||| || || Sbjct 1277 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACC 1218 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| ||||| ||||| ||||| || ||||| Sbjct 1217 TCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | |||||||| || ||||| || || |||||||| || || || || || | Sbjct 1627 TACCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGG 1568 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | || ||||| | || || ||||| || || | | ||||||||||| | Sbjct 1567 ATAAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGG 1508 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || ||||| |||||||| || ||||| |||||| | Sbjct 1507 GAATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAA 1448 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || || || || || || || || || || || ||||| Sbjct 1447 CCTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||||||||| || || || ||||||||||||||||| |||||| || Sbjct 1008 ATCCCCTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATCGTATCCGAAGGTTCGACC 949 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || || ||||| || || || ||||| Sbjct 948 TCAAGGGTAATGGTCTTGCCAGTTAATGTCTTCACGAAGATTTGCAT 902 >seq10922 Length=8781 Score = 158 bits (174), Expect = 2e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| |||||||||||| | ||||| || | ||||| ||||| || || | | ||| Sbjct 3018 ACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAGAGGGTACGACC 3077 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | |||||||||||| || || | | |||||||||||| || |||||||| || Sbjct 3078 ATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTT 3137 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| ||||| ||||||||||| || || || || || || | ||| || Sbjct 3138 GTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGACCTCAAGAGTAAT 3197 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | || || ||||| ||||||||| Sbjct 3198 GGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 3234 >seq10127 Length=8452 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | |||||||| ||||| || || || ||||| ||||| || || || |||| Sbjct 7132 TACCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 7191 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | |||||| || || ||||| | | ||| |||||||| | Sbjct 7192 AAAGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGG 7251 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || || || || || || || ||||| ||||| |||||| | Sbjct 7252 GAATACCTTCCTTATCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAA 7311 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || ||||| ||||| || || || || |||||||| Sbjct 7312 CTTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || || || || || || || || || || ||||| Sbjct 6906 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 6965 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||| ||||| | |||||| || |||||||| | | ||| ||||||||||| Sbjct 6966 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGA 7025 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || |||||||| || || ||| || ||| Sbjct 7026 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACT 7085 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || || || ||||| |||||||| || || ||||| Sbjct 7086 TCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||||||| ||| ||||| ||||||||||| || || || || || || | Sbjct 7678 TACCACCACGTAAACGCAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCG 7737 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | |||||| ||||||||||| || | |||||| ||||||| Sbjct 7738 AAAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAG 7797 Query 82702 GTATTCCTTCCTTATCTTGAAT 82723 | || |||||||||||||| || Sbjct 7798 GAATACCTTCCTTATCTTGGAT 7819 >seq43370 Length=3724 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || | ||| ||||| || || || || || || | Sbjct 2590 TACCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGG 2531 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | |||||| ||||| ||||| | | |||||||||||| | Sbjct 2530 ACAAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGG 2471 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || || || ||||||||||| || || ||| || | Sbjct 2470 GGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGA 2411 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || || || || || || || |||||||| Sbjct 2410 CTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq76450 Length=4187 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 198515 AGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATT 198574 |||||| |||||||||||| | || | ||||||| || ||| |||| | | ||||| Sbjct 997 AGGTTGCATGTGGTCTATTGGTGGTATTCATGATCAAGGTTGGGCAGAACGTGCGATATT 1056 Query 198575 TGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATT 198634 ||| ||||| | |||||||||||| |||| | || | |||||||||||| ||| || Sbjct 1057 TGGTAAGATTCGTTATATGAATTATCAGGGCTGCAAAAGGAAATTTGATGTTAATGCTTT 1116 Query 198635 T 198635 | Sbjct 1117 T 1117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980668927713425