Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9860 178 3e-39 seq60796 95.1 3e-14 >seq9860 Length=13996 Score = 178 bits (196), Expect = 3e-39 Identities = 576/886 (65%), Gaps = 15/886 (2%) Strand=Plus/Minus Query 110279 TTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTT 110338 |||| |||||||| || |||| || || ||||| || || || | ||||||| Sbjct 10841 TTATGATCGTGACTTTGGCTACAACTACTTCGGCTTCAAGACACTGGAGAGATCTTATTT 10782 Query 110339 ACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGAT 110398 || | ||||| |||| |||| | || || || ||||| | | || || || Sbjct 10781 GCTGAAAATGAATGGTAAGATTGTTGAGAGACCACAGCATATGTTAATGAGAGTAGCTAT 10722 Query 110399 TGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAA 110458 ||||| |||||| |||||||| | | | ||||||| |||| || | || | | Sbjct 10721 AGGTATACATGGAGATGATATTGATTCGGCTATTGAAACTTATAATTTGTTGTCTGAGCG 10662 Query 110459 GAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGC 110518 | || ||||||| | ||||| | ||| || | || ||| || || ||| | Sbjct 10661 TTATTTTACTCATGCTTCACCTACATTGTTTGCGGCCGCTACCAATAGACCGCAGTTGTC 10602 Query 110519 TTCTTGCTTTCTTCTAGGA-ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTA 110577 || ||||| ||| | | || | ||||||||||| ||||||| | | | Sbjct 10601 GTCATGCTT-CTTGTTGACCATGGTGGCCGATTCTATTGAGGGTATTTTCAAGTCAGTGG 10543 Query 110578 AAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTC 110637 || || ||| | ||||| ||| | || || ||||| || | || || ||| Sbjct 10542 AACAATGTGCCATGATTTCCAAATCAGCGGGTGGTATTGGCATAAATGTGCACTGCATTA 10483 Query 110638 GCTCAAAAGGAGCAAATATCG-CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATG 110696 | | || || | || | | || | || || | |||| ||| || || |||||| Sbjct 10482 GAGCTAAGGGCACTTCCATTGACGGCA-CTAACGGCACCTCAAATGGTCTGGTACCAATG 10424 Query 110697 TTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGC 110753 | || || || ||| | || ||||| |||| |||||| || | ||| Sbjct 10423 CTTAGGGTGTTTAACAATGTGGCCCGTTATGTTGATCAGGGTGGTGGCAAACGCCCTGGT 10364 Query 110754 TCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGT 110813 | |||||||| ||| | || ||||||||||||||||| |||||||| || || | Sbjct 10363 GCCTTTGCTATTTATTTGGAGCCTTGGCATTCAGATATTTTTGAATTTTTGGATTTAAAG 10304 Query 110814 AAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCA 110873 ||||| || ||||| || ||||| | ||| | || ||||| ||||||| | Sbjct 10303 AAAAACACCGGCAAGGAAGAGCACAGAGCCAGAGATCTTTTCTATGCTTTGTGGATACCC 10244 Query 110874 GATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGT 110933 || || || ||||||||||| |||||||||| ||||| || ||||||||||| Sbjct 10243 GACTTGTTTATGAAACGTGTGGAAGAAAATGGTGACTGGTCCCTAATGTGTCCTCACAAA 10184 Query 110934 TCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993 | ||| ||||| ||||| | || | || || ||||| | || || |||||| Sbjct 10183 TGTCCCGGTCTGCAGGATGTTTGGGGTGAGGAATTCGAAGAATTGTATACCAAGTATGAA 10124 Query 110994 AAAGAAGGCAAGTTTCGCAAA---CAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCT 111049 |||||||| ||| || || || || | ||||| | |||||||| || | Sbjct 10123 AAAGAAGGTAAG----GCCAATCGCACTGTCAAGGCTCAGGCTCTTTGGTTTGCTATAAT 10068 Query 111050 TGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAA 111109 |||| | ||||| ||||| || ||||| ||||| |||||||||||| || ||||| Sbjct 10067 TGAAGCCCAAGTAGAAACCGGTACTCCCTATATGTTGTATAAAGATGCCTGCAACCGCAA 10008 Query 111110 ATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | ||| || ||| | || || ||||||| || || |||||| Sbjct 10007 AAGTAACCAGCAAAATATTGGCACCATTAAGTGCAGCAACTTGTGC 9962 >seq60796 Length=8324 Score = 95.1 bits (104), Expect = 3e-14 Identities = 207/305 (68%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 304778 GATGATTTGACATTAAAATACTCTGATATCATTAAATATAACAATTTAATTAAGAAAAAG 304837 |||||||| || ||| || ||||||||||| |||||| ||||| | |||| Sbjct 2572 GATGATTTAACGCACAAACTTTCCGATATCATTAAGGCCAACAATG-AATTACGTAAAAA 2630 Query 304838 TTAACG-AGCGATTCTAATTCACATTTGGTTATTGATTATTCAAACAATTTACAATATCA 304896 | || | | || | || | ||| | |||| || || ||| | ||||||| ||| Sbjct 2631 TGAAGGCACCGGTGCTGCAGCTCATGTTATTATGGAAAATATAAAAATGTTACAATTTCA 2690 Query 304897 TATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT---CAAAGATC 304953 | | || ||| | | || ||||| || | || ||||| | || |||| || Sbjct 2691 TGTAGCCACACTCGTTGACAATGACATGCCCGG---TATGCCCAGAGCTATGCAAAAGTC 2747 Query 304954 TGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGG 305013 ||||| |||| | || | |||| ||| | || |||||||| ||||||||||| || Sbjct 2748 TGGCAAACCTCTGAAAGCCATTAAATCACGTCTAAAGGGTAAAGAAGGTCGTATTCGTGG 2807 Query 305014 TAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCA 305073 |||| | |||||||||||||| ||||| ||| | | ||| || ||||| || || || Sbjct 2808 TAATTTGATGGGAAAACGTGTAGATTTCTCAGCACGTACTGTCATTACACCCGA-TCCCA 2866 Query 305074 AATTA 305078 | ||| Sbjct 2867 ATTTA 2871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185412703959075