Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq82145 138 7e-28 seq43370 131 1e-25 seq10127 129 4e-25 seq10922 114 8e-21 >seq82145 Length=1636 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||||||| |||||||| | || ||||||||||| || ||||| || Sbjct 1397 CCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAGAC 1338 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| ||||||||||| || |||||||||||||| || |||||| | || Sbjct 1337 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGG 1278 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || ||||| || | || ||| | || || Sbjct 1277 ATTCCTTCCTTGTCTTGAATTTT-AGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 1219 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || || || |||||||| ||||| Sbjct 1218 CTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | |||||| || ||||| || || ||| |||||||| |||||||| ||||| Sbjct 1626 ACCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGA 1567 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||| || || || || |||||||||||||| |||||| | || Sbjct 1566 TAAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGG 1507 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | || ||||| || | || || | ||| | Sbjct 1506 AATACCTTCTTTGTCTTGGATTTT-AGCTTTAACATTTTCTATAGTATCCGAAGGTTCAA 1448 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 1447 CCTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 >seq43370 Length=3724 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||||| |||| || ||||| |||||||| ||||| Sbjct 2589 ACCACCACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGA 2530 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||||||||| || || || |||||||| || |||||| | || Sbjct 2529 CAAGGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGG 2470 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | | |||| || | ||||||| | || | Sbjct 2469 GATACCTTCTTTGTCTTGGATTTT-GGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGA 2411 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| ||||| ||||| || ||||||||||| Sbjct 2410 CTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10127 Length=8452 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | |||||| || || ||||| || ||| || || || |||||||| || || Sbjct 7133 ACCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 7192 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||||||||| ||||| || |||||||| ||||||||| | || Sbjct 7193 AAGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGG 7252 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||||| ||| || | || | ||| ||| | ||| | Sbjct 7253 AATACCTTCCTTATCCTGGATTTTAGCCTTC-ACGTTCTCAATGGTATCGGAAGGTTCAA 7311 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || ||||| || || ||||||||| Sbjct 7312 CTTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCATA 7361 Score = 116 bits (128), Expect = 2e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||| ||||||||| || ||| ||| ||||| |||||||| || || | ||||| | Sbjct 6917 ACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACC 6976 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||||||||| |||||||| |||||||| ||||||||| | || | |||||| || Sbjct 6977 ATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTT 7036 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || || || | | || | || | ||||| | || || || | |||| Sbjct 7037 ATCCTGGATCTT-AGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACTTCCAAGGTGA 7095 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||||||| || || || ||||| ||||| |||||| Sbjct 7096 TGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCATA 7133 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||| || ||||| || ||||| || ||||| |||||||| || || Sbjct 7679 ACCACCACGTAAACGCAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCGA 7738 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||||||||| || ||||| |||| ||| || || ||| | || Sbjct 7739 AAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAGG 7798 Query 33642 CACACCTTCTTTGTC 33656 | |||||| || || Sbjct 7799 AATACCTTCCTTATC 7813 >seq10922 Length=8781 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| || || || || ||| || || |||| || |||||||| | Sbjct 3005 CACCACCACGAAGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCG 3064 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| || || | || |||||||||||||| || ||||||||||| || |||||| | | Sbjct 3065 AGAGGGTACGACCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTG 3124 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||| || | || |||| || | ||||| | || Sbjct 3125 GAATTCCTTCTTTGTCCTGAATCTT-GGCTTTGACATTTTCAATAGTGTCCGACGGCTCG 3183 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || ||||| |||| ||||| ||||| |||||||| Sbjct 3184 ACCTCAAGAGTAATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCAT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328335140184000