Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq9860 129 5e-25 seq82145 91.5 1e-13 >seq9860 Length=13996 Score = 129 bits (142), Expect = 5e-25 Identities = 451/693 (65%), Gaps = 16/693 (2%) Strand=Plus/Plus Query 137032 GTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 ||| |||| || || ||||| ||||| || | ||| ||||| |||| ||||| |||||| Sbjct 9387 GTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGCATG 9446 Query 137092 TAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTC 137151 || | | ||| ||||| |||| ||| ||| | || | ||| | |||| | Sbjct 9447 GGGGCTAATAGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCTGAC 9506 Query 137152 CAGTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGA 137211 |||||||||| || | | ||| ||||||||| ||| | || | | || | Sbjct 9507 CAGTTCCACA---AGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCCTTA 9563 Query 137212 CTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATACT 137270 ||| | |||| | | ||||| |||||||| || | | |||| |||| |||| ||| Sbjct 9564 CTTACTGGACAGCCGGGATAAGTTTCATATGTGCCAT-CTTTTTCGGCCAATTCACAACT 9622 Query 137271 CTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTC 137330 | | ||||||||| |||||||||||| | || | | ||| || || | Sbjct 9623 AGCTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGCCTT 9682 Query 137331 TTGGCTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGAT 137390 || || || ||||| | || || | |||| ||| |||| || |||| ||| || Sbjct 9683 TTCACTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTAT 9742 Query 137391 ACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAA--CAAGCGGATAAAAGTTT 137448 || ||||| | || | ||| ||| | ||| || | |||| |||||| |||| Sbjct 9743 GCCAATAGGACGATGACGCATATTGGATTTCCTAGC-CTCAGGCAAG-GGATAATAGTTA 9800 Query 137449 GCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCG 137508 ||| || ||| | |||||||| || |||| |||| | | || || | | || Sbjct 9801 ATGTCGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTTTCAATTTTTTA 9860 Query 137509 AAATCGAAG--CTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGT 137566 ||||| ||| ||||| ||| ||| | |||| |||| | ||| || ||||| || | Sbjct 9861 AAATCAAAGGTCTTTT---CTG-GTGTGA-CAAACATATTAAGGGCTATGGAGGCCAAAT 9915 Query 137567 TGCATACGGCCGTTTCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGT 137626 | || ||||| | || | | | |||| |||||| || | ||| | |||||| Sbjct 9916 TACAAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGC 9975 Query 137627 TTCGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCA 137686 || || | ||| | || || |||| |||| | ||||||||| | || Sbjct 9976 ACTTAATGGTGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACA 10035 Query 137687 TATACGGAGTTCCGGTTTCGACTTGAGTCTCAA 137719 |||| ||||| |||||||| ||||| | |||| Sbjct 10036 TATAGGGAGTACCGGTTTCTACTTGGGCTTCAA 10068 >seq82145 Length=1636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||||||||| || ||| | || || | || || ||| | Sbjct 1398 CATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTC 1457 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 1458 GGATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 1517 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | | |||| || || || || | ||||||| | | | | ||| ||||| Sbjct 1518 ACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAA 1577 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||||||| |||| || || || Sbjct 1578 CATTCAAAAAGAATCCACCCTTCACTTGGTATT 1610 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || ||||| || || ||| | ||||| | || || || | Sbjct 1170 CATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTC 1229 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| || | || ||| |||||| || || || || || || || ||||| Sbjct 1230 CGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCA 1289 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | | |||| | ||||||||| | ||||| | | | |||| | |||| Sbjct 1290 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTG--ATTAT 1347 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||||||||| || | ||||| || ||| | ||| | || || Sbjct 1348 AATATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGG 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444582124164000