Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq82145 149 6e-31 seq9860 143 3e-29 seq43370 141 9e-29 seq10922 129 6e-25 seq10127 123 3e-23 >seq82145 Length=1636 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | ||| || |||||||| |||||||||||||||||| | ||| | Sbjct 1613 CGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGATAAAGTGCGGCCA 1554 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||| || || || |||||||||||||| ||||| || || || |||||||| Sbjct 1553 TCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 1494 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| ||||| ||| || || | || || || | ||| || || | ||||| Sbjct 1493 TCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCTAATGTAATT 1434 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| |||||||||||||||||||| Sbjct 1433 GTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || ||||| ||||| || || || || | ||| | || | ||| || | |||||||| Sbjct 1367 GTAGATTCTTTTTGTATATTATAATCAGACAATG-TGCGCCCGTCTTCCAATTGTTTGCC 1309 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 |||||||||||||| || ||||| || || || ||||| || ||||||||||| ||| Sbjct 1308 AGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTAGCTTT 1249 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | || ||||| | || || || | ||| |||||||| || || || || Sbjct 1248 AACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGT 1189 Query 134696 TTTAACGAAAATTTGCAT 134713 ||||| || |||||||| Sbjct 1188 CTTAACAAAGATTTGCAT 1171 >seq9860 Length=13996 Score = 143 bits (158), Expect = 3e-29 Identities = 482/741 (65%), Gaps = 21/741 (3%) Strand=Plus/Minus Query 8254 GAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGC 8313 |||||||||| || || ||| |||| ||||| || |||||| |||||| || || Sbjct 10054 GAAACCGGTACTCCCTATATGTTGTATAAAGATGCCTGCAACCGCAAAAGTAACCAGCAA 9995 Query 8314 AACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCC 8373 || | ||||||||| |||||||| ||||| | || |||||| | || || || Sbjct 9994 AATATTGGCACCATTAAGTGCAGCAACTTGTGCACAGAGATTGTAGAATATTCTGCCCCT 9935 Query 8374 GACGAAGTGGCCGTTTGCAATCTAGCGTCGGT-GTGTTTAAACGCGTTCGTTGATCG-AC 8431 || || | |||||||| ||| | || || | | |||| | ||| || || Sbjct 9934 GATGAGATAGCCGTTTGTAATTTGGCCTCCATAGCCCTTAA-----TATGTTTGTCACAC 9880 Query 8432 GCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCA--A 8489 ||| || | || ||| || |||||||||| | | |||| | ||| | | Sbjct 9879 CAGAAAAGACCTTTGATTTTAAAAAATTGAAAAATGTCACTAAAGTCAT--TACCAAGAA 9822 Query 8490 TTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACAT 8549 | | | ||||| || | || | |||||||||| || || | ||| || || Sbjct 9821 TCTCAACAAAATCATCGACATTAACTATTATCCCTTGCCTGAGGCTAGGAAATCCAATAT 9762 Query 8550 GCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTT--- 8606 ||| || | || ||||| | || || || ||| | ||||| | |||| || || Sbjct 9761 GCGTCATCGTCCTATTGGCATAGGTGTTCAGGGTTTTGCCGATAC-TTTG--ATTTTAAT 9705 Query 8607 GCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGT 8666 ||| |||||| || || || | ||| || | || | | || ||||| | Sbjct 9704 GCGTTACCCCTATGAGAGTGAAAAGGCGTTTTTGTTAAATCAACAGATTTTCGAAACTAT 9645 Query 8667 GTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATC 8726 ||||| |||||||| ||||| || ||| || | ||| | || ||||| || ||| | Sbjct 9644 TTATTATGGCGCATTGGAAGCTAGTTGTGAATTGGCCGAAAAAGATGGCACATATGAAAC 9585 Query 8727 GTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCC 8786 || | ||| | || | || || ||| | |||||||| ||||||||| || || Sbjct 9584 TTATCCCGGCTGTCCAGTAAGTAAGGGTATACTACAATACGATATGTGGAATAAAACACC 9525 Query 8787 CACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAA 8846 ||| |||||||| ||| || ||||| ||||| ||| ||| | ||||| Sbjct 9524 CACAGACTTGTGGAACTGGTCAGAGTTGAAGGAGAAAATCAAGCAACATGGTGTACGCAA 9465 Query 8847 TTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGA 8906 ||| || | | || ||||||||| || |||| || ||||| | || ||||| || Sbjct 9464 TTCTTTGCTATTAGCCCCCATGCCCACAGCTTCGACCGCACAAATTCTAGGCAACAATGA 9405 Query 8907 ATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTT 8966 ||||||||| |||| |||| ||| | ||| ||||| || ||| | || || || Sbjct 9404 ATCCTTTGAACCGTACACCTCCAATATTTACACTAGACGTGTTTTGTCGGGAGA--ATTC 9347 Query 8967 AATGCTG--AATCGTCATTTG 8985 |||| || |||| ||||||| Sbjct 9346 AATGTTGTCAATCATCATTTG 9326 >seq43370 Length=3724 Score = 141 bits (156), Expect = 9e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 |||| |||||||||||||| |||||||||||| | |||| || || || | ||| Sbjct 2564 TGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGT 2505 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || |||||||| || ||||| || || || |||||||| ||||| ||||| Sbjct 2504 TTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTG 2445 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | |||||||| | || || || | |||||||||||||| ||| Sbjct 2444 GCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTACCAGTT 2385 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| Sbjct 2384 AAAGTTTTGACGAAGATCTGCAT 2362 >seq10922 Length=8781 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || |||||||||||| ||| ||||| || | ||| || Sbjct 3016 AGACGCAATACTAAGTGCAGAATGGATTCCTTTTCAATATTGTAATCCGAGAGGGTACGA 3075 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| || || ||||||||||| || ||||| || || || |||||| Sbjct 3076 CCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCT 3135 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | ||||| |||| || || || |||||| Sbjct 3136 TTGTCCTGAATCTTGGCTTTGACATTTTCAATAGTGTCCGACGGCTCGACCTCAAGAGTA 3195 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| ||||| |||| ||||| || ||||| |||||| Sbjct 3196 ATGGTCTTACCCGTTAGGGTTTTGACAAAAATCTGCATT 3234 >seq10127 Length=8452 Score = 123 bits (136), Expect = 3e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||| | || || ||||| |||||||| ||||||||||| | | Sbjct 6906 CCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 6965 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || | |||||||| ||||| |||||||| |||||||| || || Sbjct 6966 AA-AGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGG 7024 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCA 134664 || ||||| || || || || || |||| || | |||| ||||| || | || | Sbjct 7025 AATACCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTTTCAATAGTGTCCGAAGGCTCGA 7083 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || |||||||||||||| || || || ||||| |||||||| Sbjct 7084 CTTCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | || || ||||||||||| || ||||||||||| || |||| | Sbjct 7146 CGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCA 7205 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | |||||||| || || |||||||| |||||||| || || || ||||| || Sbjct 7206 TCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTA 7265 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || ||||| || || || | || ||||| | ||| || || | || || Sbjct 7266 TCCTGGATTTTAGCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACTTCCAAGGTGATA 7325 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || |||||||||||||| ||||| Sbjct 7326 GTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504816718029000