Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9860 529 2e-145 seq74052 277 2e-69 seq14616 107 3e-18 >seq9860 Length=13996 Score = 529 bits (586), Expect = 2e-145 Identities = 1404/2115 (66%), Gaps = 46/2115 (2%) Strand=Plus/Plus Query 68521 ATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATA 68580 |||||||| || | ||| || ||||||| ||| | |||| | ||| ||||||| Sbjct 9144 ATGAAAGCGCCACGATCGGCGGCCATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACT 9203 Query 68581 GTCTT--AAAAATCTGTTTGATATCATCTGGAAGG-CTCGTATT--TTGAATGGATCCAC 68635 ||||| | | ||| | |||| | |||| || ||| ||| ||||| || | Sbjct 9204 GTCTTGTATAGATCACGT--ATATGTTTGGGAATTTCTTCTATGGCTTGTATGGAGCCGC 9261 Query 68636 CATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTC 68695 || ||| |||||| |||| || || ||||||| ||| || | || |||||| || Sbjct 9262 GATTGGAAATAATTTTATTTTTCATTTCATCATCCCATAAATCAAGTTCGGTTAAATCTT 9321 Query 68696 TAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATAT 68755 |||| | ||| |||| || | | ||||| || || || || | | ||||||||||| Sbjct 9322 TAAGCAAATGATGATTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATAT 9381 Query 68756 TACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTG 68815 | ||| || ||||| | |||||||| || || |||||||| || || || || || | Sbjct 9382 TGGAGGTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGG 9441 Query 68816 GCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGAT 68875 |||| || || | | ||| ||| | | ||||||| ||||||| || || | | Sbjct 9442 GCATGGGGGCTAATAGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACT 9501 Query 68876 GTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGT 68935 | ||| | ||| | || | ||| |||||| | |||||||||||| || || | Sbjct 9502 CTGACCAGTTCCACAAGTCTGTGGGTGTTTTATTCCACATATCGTATTGTAGTATACCCT 9561 Query 68936 TACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAAC 68995 ||||| | | || ||| |||||||| | || || | ||| || | |||||||| Sbjct 9562 TACTTACTGGACAGCCGGGATAAGTTTCATATGTGCCATCTTTTTCGGCCAATTCACAAC 9621 Query 68996 TTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 69055 | || || ||||| || |||||||| ||||||||||||| | ||| | || | Sbjct 9622 TAGCTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAACGCCT 9681 Query 69056 CTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAA 69115 | ||| || | || ||| | | | ||| || | ||| || || |||||||| || | Sbjct 9682 TTTCACTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAACACCTA 9741 Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTC--AGCTTCTGGAATAGGATAATAATT 69173 | || ||||| | ||| | | |||| || |||| ||| || || | |||||||| || Sbjct 9742 TGCCAATAGGACGATGACGCATATTGGA--TTTCCTAGCCTCAGGCAAGGGATAATAGTT 9799 Query 69174 AATATCTATAATTTTATTAAGATT-TCGGACTACT-ACTTTAACCACGTCCTTTAGTTTG 69231 ||| || || ||||| || ||||| | || || | |||||| || | || | ||| Sbjct 9800 AATGTCGATGATTTTGTTGAGATTCTTGG--TAATGACTTTAGTGACATTTTTCAATTTT 9857 Query 69232 AGAAAATCAAA--TC-GTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTA 69288 ||||||||| || | | | | ||||||||||| || |||| || || | |||| Sbjct 9858 TTAAAATCAAAGGTCTTTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTA 9917 Query 69289 CAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACAT 69348 ||||| |||| ||||| || | ||||| || |||||||| || | || || || Sbjct 9918 CAAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCAC 9977 Query 69349 TTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATA 69408 || || || || | ||||||||| ||||| || ||| ||||| || || || | ||| Sbjct 9978 TTAATGGTGCCAATATTTTGCTGGTTACTTTTGCGGTTGCAGGCATCTTTATACAACATA 10037 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT-AGCATT 69467 | |||||||| ||||| | || | ||| || |||| ||||| || ||| ||| || Sbjct 10038 TAGGGAGTACCGGTTTCTACTTGGGCTTCAATTATAGCAAACCAAA-GAGCCTGAGCCTT 10096 Query 69468 TATTACGGTCTTG---TAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTC 69524 | | ||| | || || ||||||||||| | ||||| | ||||||||| Sbjct 10097 GACAGTGCGATTGGCCTTAC-CT--TCTTTTTCATACTTGGTATACAATTCTTCGAATTC 10153 Query 69525 ATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC 69584 || ||||||||||| | || || ||||||| | |||||||| | ||||| || | Sbjct 10154 CTCACCCCAAACATCCTGCAGACCGGGACATTTGTGAGGACACATTAGGGACCAGTCACC 10213 Query 69585 ATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTC 69643 || || | || ||||||||||| | ||||| ||||| | ||| ||| || ||||||| Sbjct 10214 ATTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACAAAGC-ATAGAAAAGATCTC 10272 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 ||| ||| | ||||| || || || ||||| || | ||| | ||| || | |||||| | Sbjct 10273 TGGCTCTGTGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAAAATATCTG 10332 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 ||||||| || || | ||| || || | | | || || ||||| || |||||||| | Sbjct 10333 AATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACCCTGATCAA 10392 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 || | ||| || ||| | || || ||||| || | | |||||| || | || | Sbjct 10393 CATAACGGGCCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGAGGTGCCGT 10452 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCC 69881 | || || ||| || | || | || | ||| | | | | | || || || || Sbjct 10453 TAGTGCCGTCAATGGAAGTGCCCTTAGCTCTAATGCAGTGC--ACATTTATGCCAATACC 10510 Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941 || || ||| || || | ||||| ||| || || | | |||||||| || Sbjct 10511 ACCCGCTGATTTGGAAATCATGGCACATTGTTCCACTGACTTGAAAATACCCTCAATAGA 10570 Query 69942 ATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTA-TAGTTCCCGCA 69999 ||| | | ||| || || ||| || || |||| || | | || | || | || Sbjct 10571 ATCGGCCACCATGGTCAACAAG-AAGCATGACGACAACTG-CGGTCTATTGGTAGCGGCC 10628 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||| |||||||| || || ||||| || | ||||| | || ||| || |||||| Sbjct 10629 GCAAACAATGTAGGTGAAGCATGAGTAAAATAACGCTCAGACAACAAATTATAAGTTTCA 10688 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 ||||| || || ||||| ||| || ||||| || || | ||| ||||||||||| Sbjct 10689 ATAGCCGAATCAATATCATCTCCATGTATACCTATAGCTACTCTCATTAACATATGCTGT 10748 Query 70120 GGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAAC 70179 |||| || || | ||| ||| ||||||| || || ||| | ||||| || || || Sbjct 10749 GGTCTCTCAACAATCTTACCATTCATTTTCAGCAAATAAGATCTCTCCAGTGTCTTGAAG 10808 Query 70180 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTA 70239 || || |||||||| |||||| | || |||||||| ||||||| || | Sbjct 10809 CCGAAGTAGTTGTAGCCAAAGTCACGATCATAAATAATTGACGAATTTAAACGTTCTGCA 10868 Query 70240 TATTTGGTAACTATATCCATAACAGTAGGT-----GAGATAATCGGAGATCGTTTACCAT 70294 | ||| |||| ||| ||| ||| || || | || ||| || | || Sbjct 10869 TTTTTCTGCACTA----CATTGTAGT-GGTATTCGGAAATCAAAGGCGATGGTCTCCCCG 10923 Query 70295 TTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTT 70354 | | ||||||| | | | | ||| || || || |||| |||||| |||| Sbjct 10924 TCTCTTTATTAACAAAATGATACAGATCACTTATAACCTCTGAGAATACTTTTTTCGTTT 10983 Query 70355 CCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTG 70414 | ||||| ||||| |||| || || | ||||| | || ||||| || ||| | | Sbjct 10984 CTTTGTGCAAATTGGATACTGCAATACGAGCTGCCAATATGGCATAATCGCCATGATTAG 11043 Query 70415 TAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGT 70474 |||| | ||||| || | || || || || |||||| |||| || ||||| || Sbjct 11044 TAGTTAATGTAGCAGCAGTCTCTGCCGCCAAATTATCTAGTTCTTGTGTAGTAACACCAC 11103 Query 70475 TATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCA 70534 || || || | ||| || |||| | || | ||||| | ||| || | |||| Sbjct 11104 AGTAAAGGCCATTAATTACCTTCAGTGTAATGGCCACTGGATCAACGAAATCCATATTCA 11163 Query 70535 GACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAACATTCTCCTTAT 70594 ||||| |||| ||| ||| || ||||| |||||||| || ||| | ||||| Sbjct 11164 AGCCATAGCATAGCTTTTGAATTCGTGATGTTATTTTATCGAAATGAACCTCTTCCTTGC 11223 Query 70595 TTCCACTTCGTTTAA 70609 |||| |||||||| Sbjct 11224 GTCCATCTCGTTTAA 11238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | ||||| ||||| | || ||| || ||||| | | ||| ||||| ||| Sbjct 8923 TTATCTACGGTAAATTGAATAGCATTGGCTGCTGGCTTTGTTCTCAAATAATACATGCCG 8982 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 || || | ||| |||| | |||||||| || || | |||| ||| |||| Sbjct 8983 GTCTTTAAGCCTGATTTCCAGGCATAGAAATGTATGGAGGTCAATTTGCCGTAATTTGGC 9042 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATC 68537 ||||| | ||| ||||| | ||||||||||||||| |||||||| || | ||| Sbjct 9043 TCGGCCACATGTATATTGAACGATTGACTTTGATCTATGAAAGCGCCACGATC 9095 >seq74052 Length=11856 Score = 277 bits (306), Expect = 2e-69 Identities = 492/712 (69%), Gaps = 13/712 (2%) Strand=Plus/Plus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| | ||| || ||||||||||||||| | ||||| || ||||||||| ||||| | Sbjct 5446 CAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCTATCAA 5505 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || | ||| || || || || |||| ||| || | || || || || || || Sbjct 5506 ATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTGATAAT 5565 Query 39565 --CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 | || | || ||| ||| || | || | ||||||||||||||||| || Sbjct 5566 TTCAATAATTCT--CTCCCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACCGCA 5623 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || |||||||||| |||||||| | ||| ||||| || || ||||| || |||||| Sbjct 5624 AAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCAGGC 5683 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 || |||||||| || || ||||| || |||| |||||| ||| ||||| || || Sbjct 5684 ATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAGAAAATACCC 5743 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG--TATCATTATG-TATCCAC 39799 || || || ||||| |||| || | || || || | | || | | ||||| Sbjct 5744 TCCACAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCGAGGAAATCCAA 5803 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | ||||||||||| || ||| ||| ||||| ||||| || |||||||||||| Sbjct 5804 GCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAAAGAGA 5863 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 |||| | || | ||| |||| ||| |||| |||| | |||||||||||| || Sbjct 5864 TAATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAG 5923 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || | ||||| || || || || || || || ||||| | ||| || |||| |||||| Sbjct 5924 TGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACT 5983 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 ||| | || | ||| | | ||||||||| || || ||||| ||| ||||| || Sbjct 5984 TCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAGCAAAGAAA 6043 Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC---ATTG 40096 || | |||||| ||| |||| ||||| | || | | | | |||||| |||| Sbjct 6044 GCTAGAACATGTGAAATGAAATGACGTTCATTGTCGGTGAGTCTTTCCCAGTCGGAATTG 6103 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||||| || | ||| |||||||| | |||||||| || || || |||| Sbjct 6104 ---TCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTTCGGCCT 6152 >seq14616 Length=5376 Score = 107 bits (118), Expect = 3e-18 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 34639 CCAATATACTTCAAAAATTTGAGTGAGATCGATGGCCAAGTTCGCGTTATTGAAGATGGC 34698 ||||||| |||||||||||| | | ||| ||||| | | ||| | |||| Sbjct 1280 CCAATATTCTTCAAAAATTTTGCTTAAATCTCGCGCCAATGTGGGACAATTCA---TGGC 1336 Query 34699 ---AATTCCTAATTCCTTGACCTGTGTTAGAGAACGCCAATCCATATTAGCACTTCCTAG 34755 ||| || ||||| || |||||||||| ||| | ||| |||||||| ||||| || | Sbjct 1337 TAAAATACCCAATTCTTTAACCTGTGTTAAAGATCTCCAGTCCATATTGGCACTGCCCAA 1396 Query 34756 ATAAATGTGTGCATTATCCGATATCCAAAATTTTGTATGAAGAACACCGCC 34806 |||||||||| ||||| || ||||||||||||||||| | |||||| || Sbjct 1397 ATAAATGTGTTTGTTATCGGAAATCCAAAATTTTGTATGTAAAACACCACC 1447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686118210903000