Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq74052 221 1e-52 seq76374 158 1e-33 seq8915 147 2e-30 >seq74052 Length=11856 Score = 221 bits (244), Expect = 1e-52 Identities = 488/722 (68%), Gaps = 20/722 (3%) Strand=Plus/Minus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTG 43814 || || |||||||| | ||||||||| ||| | | |||||| || || | ||| | Sbjct 6144 GCTTCTTTTTGGACTGTAGAAGAAGTGGATCTTTCCAAAGACAATTCCGAC-TGGGAAAG 6086 Query 43815 CATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGC 43873 | | | |||| ||| ||||| || || ||| | || || |||||||| | Sbjct 6085 ACTCAC--CGACAATGAACGTCATTTCATTTCACATGTTCTAGCTTTCTTTGCTGCTTCC 6028 Query 43874 GACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAA 43933 || || || |||||||||||| | ||| || || | |||||||| ||| | |||| Sbjct 6027 GATGGCATTGTCAATGAAAATCTTGTTGAACGCTTCTCCCAAGAAGTACAAGTTACAGAG 5968 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 ||||| ||||| ||||| || ||||||||||| |||||| | || || |||||||| ||| Sbjct 5967 GCACGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAATGTACACTCTGAAATGTATAGT 5908 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT----TGTTTAATGC 44049 |||| || |||| || || || ||| | |||| ||| | ||| | |||||||| Sbjct 5907 ATTCTAATTGATAGTTATATTAAGGAT---CGCGAGCAGCGT-GATTATCTCTTTAATGC 5852 Query 44050 GATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTC 44109 || ||||| | || || |||| | ||| || || ||||| | ||||| || Sbjct 5851 CATTGAAACTATGCCGGCTGTTAAGCGTAAGGCTGATTGGGCTATGGCTTGGATTTCCTC 5792 Query 44110 -AAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT 44166 |||| | | |||||| ||||| || | || ||||| | |||||| || |||||||| Sbjct 5791 GAAATCGGCTAATTTTGGTGAACGTATTATTGCTTTTGCTGCTGTGGAGGGTATTTTCTT 5732 Query 44167 TTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || ||||| |||| || ||| |||||||||| ||| | |||||||| | || Sbjct 5731 CAGTGGCAGTTTTGCCTCCATCTTCTGGCTAAAGAAACGTGGTCTTATGCCTGGTCTTAC 5672 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || || ||||| || || |||||||| || |||||||| |||||||| || | Sbjct 5671 ATTCTCCAATGAATTGATTTCACGTGATGAGGGTTTACATTGTGATTTTGCGGTATTAAT 5612 Query 44287 ACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGA 44346 || | || | | | | | || | ||| ||||| || ||| | || Sbjct 5611 GTTTAAACATTTGGTACAACGT---CCCAGTCGGGAGAGAATTATTGAAATTATCACCGA 5555 Query 44347 GGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406 || || || || ||||||||||| | ||| || || || || ||||| ||||| || Sbjct 5554 AGCGGTGAAAATTGAACAAGAATTCCTTACAGATGCTTTGCCCGTCAATTTGATAGGCAT 5495 Query 44407 GAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 |||| |||||| |||| || |||| | || |||||||| || ||||| | Sbjct 5494 GAATTGTAAATTGATGTCAGAATACATAGAATTTGTGGCCGATCGTTTGCTAGTGGAATT 5435 Query 44467 GG 44468 || Sbjct 5434 GG 5433 >seq76374 Length=5101 Score = 158 bits (174), Expect = 1e-33 Identities = 262/378 (69%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607 ||||||||||||||| | |||||| | || || || || || ||| | ||||||| | Sbjct 3381 TTTGCACATTATAATCTTTGATGAAATCGATGCCATTTGCAAACAACGTGGTTCTGTGGC 3322 Query 19608 A------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 | ||| || ||||| ||||| || |||||| | | | ||| | || || || Sbjct 3321 CGGCAATAGTGGTGTCCATGATACTGTGGTAAATCAATTGTTAGCCAAAATCGATGGCGT 3262 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 | ||| | ||||| |||||||||||||| ||||||||| | | || | || || Sbjct 3261 AGAACAATTAAATAACATTTTAGTTATTGGTATGACTAATCGTCGTGATATGATTGATGA 3202 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 ||||||||| || |||||||| |||||| || | || ||||||| |||||| ||||| Sbjct 3201 CGCCTTATTGCGTCCCGGTCGTTTGGAAGTACAAATGGAAATTAGTTTACCCAATGAACA 3142 Query 19782 TGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAA---AATAACCTTTT 19838 || |||||| |||||||||| || || || | |||||| || ||||| Sbjct 3141 GGGTCGTGTGCAAATTTTAAATATTCACACCAAACGCATGCGTGAATTCAATAA------ 3088 Query 19839 AAATGAC---GATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGC 19895 || || | ||||| ||| | || ||||| || ||| ||||||| ||| || || Sbjct 3087 AATTGCCCCAGATGTTGATTCCAAGGAGATTGCTGCTCTTACTAAAAACTTTAGTGGTGC 3028 Query 19896 AGAACTTGAGGGATTAGT 19913 ||| | || || || || Sbjct 3027 CGAATTGGAAGGTTTGGT 3010 >seq8915 Length=10834 Score = 147 bits (162), Expect = 2e-30 Identities = 231/331 (70%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 41093 CAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCC 41152 |||||||||||| |||||||| ||||||||| | | ||||||||| || || || || Sbjct 9303 CAATGGTGAACTATCATGTCAGTTGTATCAACGCAGTGCTGACATGGGTCTTGGAGTGCC 9244 Query 41153 GTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 ||||| ||||| |||||| | || || ||||||||||| || ||||| ||| || Sbjct 9243 ATTTAATATAGCTTCATATGCTTTACTAACATATATGATTGCTCATATTACCGGTTTGAA 9184 Query 41213 ACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 ||| || || ||| |||| || || ||| ||| |||| | ||||| || || || Sbjct 9183 ACCAGGAGATTTTATTCATACCACTGGTGATACCCATGTTTATAAGAATCATATTGAACC 9124 Query 41273 GTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGC 41332 || | |||||||| | ||| |||||| | || || || | | || || ||||| | Sbjct 9123 TTTGAAGGAACAACTAAAACGTAAACCTCGTCCTTTCCCTAAATTGCTCATAAAACGTGA 9064 Query 41333 TGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTA 41392 ||| | | || || ||||| | || ||||||| || || || || || || Sbjct 9063 AGTTAAGGATATAGAGGATTTCAAATTTGAAGATTTTGAAATTGTCGGCTATAAACCTTA 9004 Query 41393 CCCTAAAATCCACATGGACATGTCTGTATGA 41423 || ||||| | ||||| ||| |||| ||| Sbjct 9003 TCCAAAAATAGAAATGGAAATGGCTGTTTGA 8973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397009989160375