Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9860 324 1e-83 seq82145 131 1e-25 seq43370 104 2e-17 seq10127 89.7 4e-13 >seq9860 Length=13996 Score = 324 bits (358), Expect = 1e-83 Identities = 1008/1538 (66%), Gaps = 43/1538 (3%) Strand=Plus/Plus Query 130562 ATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCG 130621 || |||||||| | || || ||||| | | |||| ||| ||||||||| | Sbjct 9144 ATGAAAGCGCCACGATCGGCGGCCATTTGTATGGTGGTCTTAACGGAAATCTCCCAAACT 9203 Query 130622 GTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTG 130681 |||||||||||||| | || |||||||| || | || | ||| | | ||| Sbjct 9204 GTCTTGTATAGATCACGTATATGTTTGGGAATTTCTTCTATGGCTTGTATGGAGCCGCGA 9263 Query 130682 TTGGCTATAATTTCGTTGCGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTT 130741 |||| ||||||| || ||| | ||| | || |||| | | |||||| Sbjct 9264 TTGGAAATAATTTTATTTTTCATTTCATCATCCCATAAATCAAGTTCGGTTAAATCTTTA 9323 Query 130742 ACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTG 130801 | |||||||| ||| | | | || || || | || || |||||| |||||| ||| Sbjct 9324 AGCAAATGATGATTGACAACATTGAATTCTCCCGACAAAACACGTCTAGTGTAAATATTG 9383 Query 130802 CTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGC 130861 ||| |||||||||||||||| |||||||| | |||||||| || | || |||||| Sbjct 9384 GAGGTGTACGGTTCAAAGGATTCATTGTTGCCTAGAATTTGTGCGGTCGAAGCTGTGGGC 9443 Query 130862 ATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCA 130921 ||| || | || | |||||| || | ||| || | ||||||| |||||| || Sbjct 9444 ATGGGGGCTAATAGCAAAGAATTGCGTACACCATGTTGCTTGATTTTCTCCTTCAACTCT 9503 Query 130922 TCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCT 130981 ||| | ||| | || ||| | || ||||||||||| |||||||||| || Sbjct 9504 GACCAGTTCCACAAGTCTGTGGGTGTT---TTATTCCACATATCGTATTGTAGTATACCC 9560 Query 130982 TTACTGGCGGGACTG----GATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTC 131037 ||||| | |||| | ||| | | ||| || | || || |||| || Sbjct 9561 TTACTTACTGGACAGCCGGGAT----AAGTTTCATATGTGCCATCTTTTTCGGCCAATTC 9616 Query 131038 GTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTT 131097 ||||||||||| || || |||||||| |||||| ||| |||| |||||| Sbjct 9617 ACAACTAGCTTCCAATGCGCCATAATAAATAGTTTCGAAAATCTGTTGATTTAACAAAAA 9676 Query 131098 CGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTAT 131157 ||| | | ||||| || || | ||||||||| |||| || || | |||||| | Sbjct 9677 CGCCTTTTCACTCTCATAGGGGTAACGCATTAAAATCAAAGTATCGGCAAAACCCTGAAC 9736 Query 131158 CCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGT--GGGATAA 131215 || | ||| | || | ||| | ||| |||| | | | | || ||||||| Sbjct 9737 ACCTATGCCAATAGGACGATGACGCATATTGGATTTCCTAG--CCTCAGGCAAGGGATAA 9794 Query 131216 AGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAAT 131275 ||||||||| || |||||||| | ||| | | || ||||| |||||||| Sbjct 9795 TAGTTAATGTCGATGATTTTGTTGAGATTCTTGGTAATGACTTTAGTGACATTTTTCAAT 9854 Query 131276 TTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCC 131335 || | |||||||| || |||| | | ||||| ||| | ||| || ||| Sbjct 9855 TTTTTAAAATCAAAGGTCT---TTTCTGGTGTGACAAACATATTAAGGGCTATGGAGGCC 9911 Query 131336 AGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTA 131395 | ||||||||| || | || ||| | |||| | ||||| || | |||||| || Sbjct 9912 AAATTACAAACGGCTATCTCATCAGGGGCAGAATATTCTACAATCTCTGTGCACAAGTTG 9971 Query 131396 CTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTA 131454 |||| ||| |||||||| | |||||| || || ||||| || | || | || || || Sbjct 9972 CTGCACTTAATGGTGCCAATATTTTGCTGGTTACTTTT-GCGGTTGCAGGCATCTTTATA 10030 Query 131455 CATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGT--ATCGAAAGAGTTTT 131512 || ||| ||||| || || ||||| ||||| | |||||| || | | |||||| | Sbjct 10031 CAACATATAGGGAGTACCGGTTTCTACTTGGGCTTCAATTATAGCAAACCAAAGAGCCT- 10089 Query 131513 CGAGCA--GACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTT 131570 |||| |||| | | ||| | || | | |||||| || || ||||| || Sbjct 10090 -GAGCCTTGACAGT-GCGATTGGCCTTACCTTC-TTTTTCATACTTGGTATACAATTCTT 10146 Query 131571 CAAAGTTTTGGCC--AAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGA 131628 | || | | || |||| ||| || | |||||||| | ||||||||||| || Sbjct 10147 CGAATTCCTCACCCCAAACATCCTG--CAGACCGGGACATTTGTGAGGACACATTAGGGA 10204 Query 131629 CCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAA 131688 ||| | || || | ||| || || ||||||||||| || || | ||| || || || || Sbjct 10205 CCAGTCACCATTTTCTTCCACACGTTTCATAAACAAGTCGGGTATCCACAAAGCATAGAA 10264 Query 131689 CAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAA 131748 |||||||| ||| | | |||||| | || | |||| || |||| ||||| || || Sbjct 10265 AAGATCTCTGGCTCTGTGCTCTTCCTTGCCGGTGTTTTTCTTTAAATCCAAAAATTCAAA 10324 Query 131749 AATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCC 131805 ||| || | |||||| || |||||||| | || | || || ||| || ||| || Sbjct 10325 AATATCTGAATGCCAAGGCTCCAAATAAATAGCAAAGGCACCAGGGCGTTTGCCACCACC 10384 Query 131806 TTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGC 131865 |||| ||||| ||| ||| ||||| | || | | ||| || ||| ||| || | Sbjct 10385 CTGATCAACATAACGGGCCACATTGTTAAACACCCTAAGCATTGGTACCAGACCATTTGA 10444 Query 131866 GTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCC 131925 | | || || |||| | |||| | |||| || ||||| || ||| || || | || Sbjct 10445 GGTGCCGTTAGTGCCGTCAATGGAAGTGCCCTTAGCTCTAATGCAGTGCACATTTATGCC 10504 Query 131926 AATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTG--TTATAGATACCT 131983 |||||| || | |||| || || | || |||| ||| | || || | ||||| Sbjct 10505 AATACCACCCGCTGATTTGGAAATCATGGCACATT--GTTCCACTGACTTGAAAATACCC 10562 Query 131984 TCCACGCTGTCCGCGGCAAT-GTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAAT-G 132041 || | || || | || ||| || || ||||| || |||||||| ||| | | | Sbjct 10563 TCAATAGAATCGGCCACCATGGTCAAC-AAGAAGCATGACGACAACTG-CGGTCTATTGG 10620 Query 132042 TGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAA 132079 | |||| | ||||||||| || || || |||||| Sbjct 10621 TAGCGGCCGCAAACAATGTAGGTGAAGCATGAGTAAAA 10658 >seq82145 Length=1636 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| ||||||||||| || | || || ||||||||||| ||||||||| Sbjct 1625 CCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGAT 1566 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | ||| ||||| ||| |||| | |||||||||||| || || Sbjct 1565 AAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 1506 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||| || ||| | |||||| ||| || | | |||||| Sbjct 1505 ATACCTTCTTTGTCTTGGATTTTAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACC 1446 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || | ||| ||||| | ||||| || || |||||||| Sbjct 1445 TCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCAT 1399 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||| || ||||||||||| || ||||| |||||||| ||||| || || Sbjct 1399 TGCCACCACGCAAACGTAATACCAAATGCAATGTAGATTCTTTTTGTATATTATAATCAG 1340 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || ||||| ||||||| | ||||| || || |||| | ||| |||||||| || | Sbjct 1339 ACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 1280 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || || || ||| | |||| | ||| || | | |||| Sbjct 1279 GGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAA 1220 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||| || | |||||| |||| || || |||||||||||||| Sbjct 1219 CCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTAACAAAGATTTGCAT 1171 >seq43370 Length=3724 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 |||||||||||| || || || ||||| || ||||||||| || | |||| | ||||| Sbjct 2571 TACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTC 2512 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||| ||| | || | ||| |||||||| || || | ||| ||||| || Sbjct 2511 CAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTG 2452 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| || | |||| | ||||| | | || ||||| | || || | ||| Sbjct 2451 GATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTT 2392 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | |||||| || ||||| ||||| Sbjct 2391 ACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq10127 Length=8452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 |||||| || | || | |||||||| | || || || ||||| || |||||||| Sbjct 6905 GCCTCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 6964 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || |||| | ||||| | ||||| ||||| | || | ||| || ||||| || || Sbjct 6965 CAAAGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGG 7024 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| |||||| || | | |||| | |||||| | | || || Sbjct 7025 AATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGAC 7084 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | || || | ||| || |||| || || || |||||||||||| Sbjct 7085 TTCCAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCATA 7133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424457553887400