Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq70009 105 8e-18 seq9860 102 1e-16 >seq70009 Length=3032 Score = 105 bits (116), Expect = 8e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||||||||| ||| | | ||| || || |||||||| | ||||| |||||||| ||||| Sbjct 2404 ATCTTTGCCGCCCGTTAAACGTGTACCGAATTGACCTCTAGGCTCTAGGAGATTAATATT 2463 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 || || |||| |||| | |||||| || ||||| || || | || || || |||| Sbjct 2464 ATTCGAGCCCACATAGTTCTGGGCCAAATTAACAATGGTCATTTGT-AGTGATACCTCAC 2522 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTT 179234 ||||||||||||| ||| | || ||||| | | | || || |||||||| Sbjct 2523 CGTGATGGTAAGCGGACATTTCAGCCACCGAACCTGACAGTTGAGCCACCTT 2574 >seq9860 Length=13996 Score = 102 bits (112), Expect = 1e-16 Identities = 369/574 (64%), Gaps = 19/574 (3%) Strand=Plus/Plus Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 ||||| || ||| || | ||| || ||||| | |||||| || ||||| | |||||| Sbjct 9708 AAAATCAAAGTATCGGCAAAACCCTGAACACCTATGCCAATAGGACGATGACGCATATTG 9767 Query 118575 GACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 || |||| ||| ||| || ||||||| | || | ||||| | | || ||||| Sbjct 9768 GATTTCCTAGC---CTCAGGCAAGGGATAATAGTTAATGTCGATGATTTTGTTGAGATTC 9824 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691 ||||| | || || |||| | | | |||| ||||||| |||| ||| Sbjct 9825 TTGGTAATGACTTTAGTGACATTTTTCAATTTTTTAAAATCAAAG------GTCTTTTCT 9878 Query 118692 T---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 ||||| || || |||||| || || |||| |||||| || | ||||||| Sbjct 9879 GGTGTGACAAACATATTAAGGGCTATGGAGGCCAAATTACAAACGGCTATCTCATCAGGG 9938 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 ||| || |||| ||| || ||||||||||| | |||||||||||| | || | Sbjct 9939 GCAGAATATTCTACAATCTCTGTGCACAAGTTGCTGCACTTAATGGTGCCAATATTTTGC 9998 Query 118809 TGATTTGACTTT--GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 118866 || || ||||| ||| || ||||| || || | ||| || || || || || || Sbjct 9999 TGGTT--ACTTTTGCGGTTGCAGGCATCTTTATACAACATATAGGGAGTACCGGTTTCTA 10056 Query 118867 TTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCC 118926 ||||| | | ||||| ||| | | | ||| |||||| ||||| | Sbjct 10057 CTTGGGCTTCAATTATAGCAAACCAAAGAGCCTGAGCCTTGACAGTGCGATTGGCCTTAC 10116 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 | |||| || ||||| || || | |||| || || |||||| | || || | Sbjct 10117 CTTCTTTTTCATACTTGGTATACAATTCTTCGAATTCCTCACCCCAAACATCCTGCAGAC 10176 Query 118987 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 119046 | || || | || || | || ||||| | |||| || || || || ||||| | Sbjct 10177 CGGGACATTTGTGAGGACACATTAGGGACCAGTCACCATTTTCTTCCACACGTTTCATAA 10236 Query 119047 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080 | | ||| || ||||| | || |||| ||||| Sbjct 10237 ACAAGTCGGGTATCCACAAAGCATAGAAAAGATC 10270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617723419737000