Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9860 118 1e-21 >seq9860 Length=13996 Score = 118 bits (130), Expect = 1e-21 Identities = 570/898 (63%), Gaps = 25/898 (3%) Strand=Plus/Minus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 ||||| |||| ||| | ||||| || || | || ||||| | || || || | ||| Sbjct 10270 GATCTTTTCTATGCTTTGTGGATACCCGACTTGTTTATGAAACGTGTGGAAGAAAATGGT 10211 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAG 104818 | ||||| || | ||||| |||| || ||||| |||| ||||||||| Sbjct 10210 GACTGGTCCCTAATGTGTCCTCACAAATGTCCCGGTCTGCAGGATGTTTGGGGTGAGGAA 10151 Query 104819 TTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCT 104878 || |||| | || || ||||| || |||||||| ||| | | || || ||| Sbjct 10150 TTCGAAGAATTGTATACCAAGTATGAAAAAGAAGGTAAGGCCAATCGCACTGTCAAGGCT 10091 Query 104879 GCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTT 104938 | | | ||| ||||| | | | ||| || || ||||| || || ||| | Sbjct 10090 CAGGCTCTTTGGTTTGCTATAATTGAAGCCCAAGTAGAAACCGGTACTCCCTATATGTTG 10031 Query 104939 TACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCC 104998 || ||||| ||||| |||| || ||||| || | ||| | || || ||| | | Sbjct 10030 TATAAAGATGCCTGCAACCGCAAAAGTAACCAGCAAAATATTGGCACCATTAAGTGCAGC 9971 Query 104999 AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTC 105058 || | || ||||| || | |||| | | | | ||||||| || || ||||| | Sbjct 9970 AACTTGTGCACAGAGATTGTAGAATATTCTGCCCCTGATGAGATAGCCGTTTGTAATTTG 9911 Query 105059 GCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAA 105118 || || || || || | || ||| ||||| |||||| ||||||| | ||||| Sbjct 9910 GCCTCCATAGCCCTTAATATGTTTGTCACACCAGA---AAAGACCTTTGATTTTAAAAAA 9854 Query 105119 CTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTT 105178 | | | || || ||| | ||||| || || |||| | | || || | || | | Sbjct 9853 TTGAAAAATGTCACTAAAGTCATTACCAAGAATCTCAACAAAATCATCGACATTAACTAT 9794 Query 105179 TACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 105235 || ||| | |||| ||| | ||||| |||||| | || ||||| ||||| | ||| Sbjct 9793 TATCCCTTGCCTGAG---GCTAGGAAATCCAATATGCGTCATCGTCCTATTGGCATAGGT 9737 Query 105236 GTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCG 105295 ||||||||| | || ||| || ||| | || || | | ||| || | ||| Sbjct 9736 GTTCAGGGTTTTGCCGATACTTTGATTTTAATGCGTTACCCCTATGAGAGTGAAAAGGCG 9677 Query 105296 ----AAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAG 105351 ||||||| | || || || || || ||| | | ||| | || || || Sbjct 9676 TTTTTGTTAAATCAA----CAGATTTTCGAAACTATTTATTATGGCGCATTGGAAGCTAG 9621 Query 105352 TTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACA 105411 || || ||||| || ||||| |||||||||| | | || | ||||| | | Sbjct 9620 TTGTGAATTGGCCGAAAAAGATGGCACATATGAAACTTATCCCGGCTGTCCAG-TAAGTA 9562 Query 105412 AGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC---CAAGCTTCACTACGACTGGG 105467 |||| | || |||| ||||||| |||| | || || ||| | ||||| Sbjct 9561 AGGGTATACTACAATACGATATGT-GGAATAAAACACCCACAGACTT--GTGGAACTGGT 9505 Query 105468 AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAA 105527 || | ||||| |||||| | | ||| | || || | | || | || || | Sbjct 9504 CAGAGTTGAAGGAGAAAATCAAGCAACATGGTGTACGCAATTCTTTGCTATTAGCCCCCA 9445 Query 105528 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 |||| ||||| || ||||||||||| | || || ||||||| ||||||||| ||||| Sbjct 9444 TGCCCACAGCTTCGACCGCACAAATTCTAGGCAACAATGAATCCTTTGAACCGTACAC 9387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582589503273000