Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10922 170 2e-37 seq43370 167 2e-36 seq10127 167 2e-36 seq82145 159 3e-34 seq76450 93.3 4e-14 >seq10922 Length=8781 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | ||||||||||| || || ||||| Sbjct 3233 ATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATTACTCTTGAGGTCGAGCCGTCG 3174 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||| ||||||||||| || ||||| |||||| Sbjct 3173 GACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAA 3114 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || |||||||||||||| || ||| | || |||||||| Sbjct 3113 CAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACCCTCTCGGATTACAAT 3054 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||| || | | || || || |||||| | || ||||| Sbjct 3053 ATTGAAAAGGAATCCATTCTGCACTTAGTATTGCGTCTTCGTGGTGG 3007 >seq43370 Length=3724 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| | || || || | ||||| | ||||| || || ||| Sbjct 2362 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 2421 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||| |||||||||||||| || || || |||||| Sbjct 2422 GACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 2481 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || |||||||||||||| || ||| | ||||| |||||| Sbjct 2482 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 2541 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || ||||||||||| | ||| | || ||||| || Sbjct 2542 ATCCAAAAGGAATCCACTTTACATTTGGTACTCCGTCTTCGTGGTGGTAT 2591 >seq10127 Length=8452 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||||||||| |||| || | ||||| ||||| ||| Sbjct 7360 ATGCAGATTTTCGTTAAAACCTTGACCGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 7301 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||| || || || ||||| || || || ||||| Sbjct 7300 GATACCATTGAGAACGTGAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 7241 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||||||||||||||||||| | ||| |||| || |||||| Sbjct 7240 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGACGCACCCTTTCTGACTACAAC 7181 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | ||||| || ||||||||||| ||||| || Sbjct 7180 ATCCAGAAGGAATCCACCCTCCATTTAGTATTGCGTTTGCGTGGTGGTAT 7131 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || ||||||| || | || || | ||||| || || || Sbjct 7132 ATGCAAATCTTCGTAAAGACCTTGACCGGTAAAACCATCACCTTGGAAGTCGAGCCTTCG 7073 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || || || ||||| || || || ||||| Sbjct 7072 GACACTATTGAAAACGTCAAGGCTAAGATCCAGGATAAGGAAGGTATTCCTCCAGATCAG 7013 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||||||||||||||| || || | || || |||||| Sbjct 7012 CAACGTTTGATCTTTGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCTGACTACAAC 6953 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||||||||| ||| | |||||||| | ||| | || || ||| Sbjct 6952 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTACGTCTTCGTGGAGGC 6905 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || ||||| || ||||| || || || || ||||| ||| | || | || || |||||| Sbjct 7819 ATCCAAGATAAGGAAGGTATTCCTCCAGACCAACAACGTCTGATCTTTGCTGGTAAACAA 7760 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 |||||||| | ||| |||| || |||||||| |||||||| || || | || ||| Sbjct 7759 TTGGAAGATGGCCGCACCCTTTCGGACTACAACATCCAAAAGGAATCTACTCTCCACTTG 7700 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||||| || Sbjct 7699 GTTTTGCGTTTACGTGGTGGTAT 7677 >seq82145 Length=1636 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| ||||| | || ||| | || || || || || Sbjct 1170 CATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTC 1229 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || ||| |||||||||||||| ||||| || ||||| ||||| Sbjct 1230 CGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCA 1289 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | || |||||||||||||||||| | || | || ||||| || Sbjct 1290 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAA 1349 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || || |||||||| || |||||||| |||||||| Sbjct 1350 TATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGCAT 1400 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| | || || || | ||||| | || || ||||| || Sbjct 1398 CATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTC 1457 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| ||||| |||||||||||||| || || || ||||| Sbjct 1458 GGATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 1517 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||| || || || |||||||| | || | ||||| ||||| Sbjct 1518 ACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAA 1577 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || || ||| | || ||||| ||||||||||| ||||| || Sbjct 1578 CATTCAAAAAGAATCCACCCTTCACTTGGTATTGCGTTTGCGTGGTGGTAT 1628 >seq76450 Length=4187 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 135473 TTGTGGAACGCGGCACAACGGCAGCT---TAAGCGAGAAGGCAAAATGCACGGATTTATG 135529 || ||||| | || |||| |||||| ||| ||||| |||||||| || ||| || Sbjct 755 TTATGGAATTCTGCTCAACTGCAGCTGGTTAAT---GAAGGTAAAATGCATGGCTTTTTG 811 Query 135530 CGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAA 135589 |||||||||||||| || || || || || ||| | | || || | |||| | || Sbjct 812 CGCATGTATTGGGCTAAGAAAATCTTAGAGTGGACAGAGTCTCCAGAGCAGGCTTTGGAA 871 Query 135590 CACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTA 135649 | || || || |||||||| | || ||||||||||| || ||| | ||||| || || Sbjct 872 TATGCCATTTTACTTAATGATAAGTATAGTTTAGATGGCCGAGATCCCAATGGTTATGTG 931 Query 135650 GGT 135652 ||| Sbjct 932 GGT 934 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 135649 AGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTT 135708 |||||| |||||||||||| | ||| | || |||||||| ||| || || | || Sbjct 997 AGGTTGCATGTGGTCTATTGGTGGTATTCATGATCAAGGTTGGGCAGAACGTGCGATATT 1056 Query 135709 TGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 ||| |||||||| |||||||| ||| | || || | ||| |||||| |||| ||| Sbjct 1057 TGGTAAGATTCGTTATATGAATTATCAGGGCTGCAAAAGGAAATTTGATGTTAAT 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434417836104000