Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq43370 111 1e-19 seq82145 104 2e-17 seq10127 102 6e-17 seq10922 91.5 1e-13 >seq43370 Length=3724 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||| | ||||| ||| ||||| | || ||||| || Sbjct 2362 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 2421 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| |||||||||||| | || || | Sbjct 2422 GACACCATTGAAAAT--GTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCAGATC 2479 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || || || || ||||||||||| || | |||| ||||||||| |||| Sbjct 2480 AACAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACA 2539 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || |||||| |||||||| | ||| | ||||| || Sbjct 2540 ACATCCAAAAGGAATCCACTTTACATTTGGTACTCCGTCTTCGTGGTGG 2588 >seq82145 Length=1636 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || || ||||| || |||||||| || ||||||||||| Sbjct 1264 GACAAGGAAGGAATCCCACCAGATCAACAACGTTTGATTTTTGCTGGCAAACAATTGGAA 1323 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| ||||| ||||| || || |||||||| || ||||||||||| || Sbjct 1324 GACGGGCGCACATTGTCTGATTATAATATACAAAAAGAATCTACATTGCATTTGGTATTA 1383 Query 28003 CGTTTGCGTGGCGGC 28017 ||||||||||| ||| Sbjct 1384 CGTTTGCGTGGTGGC 1398 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| |||||| | || || ||| | Sbjct 1399 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTCG 1458 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | || || || ||| ||||| |||||||||||| |||| || || Sbjct 1459 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1518 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || ||||| || || || || ||||| || | |||| || ||||| |||||| Sbjct 1519 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAAC 1578 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| ||| | || ||||| |||||||||||||| || Sbjct 1579 ATTCAAAAAGAATCCACCCTTCACTTGGTATTGCGTTTGCGTGGTGG 1625 >seq10127 Length=8452 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || |||||||| || || |||||||| ||||||||||| Sbjct 7039 GATAAGGAAGGTATTCCTCCAGATCAGCAACGTTTGATCTTTGCCGGCAAACAATTGGAA 6980 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || |||||||||||||| ||| ||| | |||||||| | Sbjct 6979 GATGGTCGCACTTTGTCTGACTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTA 6920 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | ||||| |||| Sbjct 6919 CGTCTTCGTGGAGGCG 6904 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || |||||||| || || || ||||| ||||||||||| Sbjct 7267 GATAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTCGCCGGCAAACAATTGGAA 7208 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | | || || ||||||||||| || || ||| | ||||| || ||| Sbjct 7207 GATGGACGCACCCTTTCTGACTACAACATCCAGAAGGAATCCACCCTCCATTTAGTATTG 7148 Query 28003 CGTTTGCGTGGCGG 28016 ||||||||||| || Sbjct 7147 CGTTTGCGTGGTGG 7134 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || || ||||| | || ||||| || ||||||||||| Sbjct 7813 GATAAGGAAGGTATTCCTCCAGACCAACAACGTCTGATCTTTGCTGGTAAACAATTGGAA 7754 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| | | || || |||||||||||||| || ||| | || ||||||||| Sbjct 7753 GATGGCCGCACCCTTTCGGACTACAACATCCAAAAGGAATCTACTCTCCACTTGGTTTTG 7694 Query 28003 CGTTTGCGTGGCGG 28016 ||||| ||||| || Sbjct 7693 CGTTTACGTGGTGG 7680 >seq10922 Length=8781 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| ||||| || || || || ||||| |||| ||||| | Sbjct 3234 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATTACTCTTGAGGTCGAGCCGTC 3175 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || |||||| || || ||||||||||| |||| || || Sbjct 3174 GGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 3115 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||||| || ||||| || |||||||||||||| || | || | | | || |||||||| Sbjct 3114 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACCCTCTCGGATTACAA 3055 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||| || || | |||| || || |||||| | ||||| || Sbjct 3054 TATTGAAAAGGAATCCATTCTGCACTTAGTATTGCGTCTTCGTGGTGG 3007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355463064003525