Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10127 127 5e-24 seq82145 104 5e-17 seq43370 104 5e-17 >seq10127 Length=8452 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||| || | || || |||||||| ||||||||||| || || | | Sbjct 6908 TCCACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAA 6967 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||||||| || ||||| || ||||| | ||||| || || ||||||| Sbjct 6968 AGTGCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGAAT 7027 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||| ||||||||||| || |||||||| || ||||| || || || || Sbjct 7028 ACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACTTC 7087 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || || || | |||||||| || | ||||| Sbjct 7088 CAAGGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || || |||||||| || || | |||||| | ||||||||||| || Sbjct 7158 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCCAATTGT 7217 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| |||||||| | ||||| || || || |||| |||||||| |||||||| || Sbjct 7218 TTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATTTTA 7277 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| || ||||| || || |||||| || | ||||| || || || || Sbjct 7278 GCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCGGTC 7337 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | || || || || | |||||| Sbjct 7338 AAGGTTTTAACGAAAATCTGCAT 7360 Score = 107 bits (118), Expect = 4e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| ||||| || || ||||||||||| || |||| |||||| | |||||||||| || Sbjct 7703 GTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCCAATTG 7762 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 || || || ||||| || ||||||||||| ||||||| |||||||| || ||||| Sbjct 7763 TTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGAT 7819 >seq82145 Length=1636 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| || |||||||| | | || | || ||||||| || ||||| Sbjct 1367 GTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 1308 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | |||||||| || || || | |||||||||||| || || || ||| Sbjct 1307 GCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTA 1248 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || || || || |||||||| | |||||| || || || || | ||| Sbjct 1247 ACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGTC 1188 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 1187 TTAACAAAGATTTGCAT 1171 >seq43370 Length=3724 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || | |||||| || ||||||||||| || || | | ||| Sbjct 2583 ACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 2524 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || |||||||| | |||||||| || || || | || Sbjct 2523 GCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACC 2464 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || || || ||||| |||||||| || || || || | Sbjct 2463 TTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAA 2404 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | ||| || || || | |||||| Sbjct 2403 GGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157784535707375