Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq82145 147 5e-30 seq43370 140 8e-28 seq33795 132 1e-25 seq10127 131 4e-25 >seq82145 Length=1636 Score = 147 bits (162), Expect = 5e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || |||||||||||||| | ||||| |||| ||||| | |||||||| | ||| Sbjct 1602 GTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCGGATAAAGTGCGGCCATCTTCCAACTG 1543 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| |||||||| || | || ||||| || || ||||||||||| ||||||||||| || Sbjct 1542 CTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGAT-TT 1484 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| ||| || || || || | ||| || ||||| || || || || |||| Sbjct 1483 TAGCTTTAACATTTTCTATAGTATCCGAAGGTTCAACCTCTAATGTAATTGTTTTACCCG 1424 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| | ||| | |||||| Sbjct 1423 TTAATGTTTTAACGAAAATTTGCAT 1399 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| | ||| || | ||| ||||| | || || ||| Sbjct 1367 GTAGATTCTTTTTGTATATTATAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 1308 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | |||||||| || || || || |||||||||||||| || ||| || || Sbjct 1307 GCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGAAT-TTTAGCTTT 1249 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | || || || || ||||| || ||||| ||||| || Sbjct 1248 AACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGT 1189 Query 225696 TTTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 1188 CTTAACAAAGATTTGCAT 1171 >seq43370 Length=3724 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || | ||||||||| ||||||| ||||| |||| ||| || Sbjct 2583 ACGAAGACGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 2524 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || ||||||||||| | |||||||| || || || ||||| Sbjct 2523 GCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACC 2464 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||| || ||| ||| ||| |||||||| || | || || || || Sbjct 2463 TTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAA 2404 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || |||||||| | ||| | ||||| Sbjct 2403 GGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 2362 >seq33795 Length=2236 Score = 132 bits (146), Expect = 1e-25 Identities = 135/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| ||||| ||| |||| || ||||| ||||| || ||||||||| | || || Sbjct 1336 CAAATTTATAACGTAATTGTTACAGCCCATGCATTTGTCATAATTTTCTTTATAGTAATA 1395 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || |||||||||||||| ||||| |||| |||| || || ||| Sbjct 1396 CCAATTATAATTGGAGGGTTCGGAAATTGATTAGTTCCGCTAATACTTGGGGCACCAGAT 1455 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTA 7725 || || |||||| | | || |||||||| |||||| |||| || || || |||| Sbjct 1456 ATAGCATTTCCACGAATAAATAATATAAGATTTTGAATACTTCCCCCCTCTCTTA 1510 >seq10127 Length=8452 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||| ||||| || ||||||| ||||| || | |||||| Sbjct 6911 ACGAAGACGTAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 6970 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || || ||||| | ||||| || || || |||||||| Sbjct 6971 GCGACCATCTTCCAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGAATACC 7030 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| || ||| || ||||| || | || || || || Sbjct 7031 TTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACTTCCAA 7090 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || ||||| || |||| ||| | |||||| Sbjct 7091 GGTGATGGTTTTACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| |||||||| || |||| ||||| || | | || | |||||||| | || Sbjct 7158 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCCAATTGT 7217 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | ||||| || || || |||||||||||||| || ||||| || Sbjct 7218 TTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATTTTA 7277 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| || ||||| || || | ||| || || || ||||| || ||||| ||| Sbjct 7278 GCCTTCACGTTCTCAATGGTATCGGAAGGTTCAACTTCCAAGGTGATAGTTTTGCCGGTC 7337 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| | ||||| Sbjct 7338 AAGGTTTTAACGAAAATCTGCAT 7360 Score = 104 bits (114), Expect = 6e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||||||||| ||||| ||||||| ||||| || | | || | |||||||| | || Sbjct 7703 GTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCCAATTG 7762 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 || ||||| ||||| || ||||||||||| || |||||||||||||| |||||||| Sbjct 7763 TTTACCAGCAAAGATCAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGAT 7819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191124357900050