Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq74052 165 7e-36 >seq74052 Length=11856 Score = 165 bits (182), Expect = 7e-36 Identities = 471/718 (66%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || ||||| || || || ||||||||||| || | ||| | || || || || || Sbjct 5441 ACTAGCAAACGATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCT 5500 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || || | || || | || | ||| | || |||||||| || | || ||||| ||| Sbjct 5501 ATCAAATTGACGGGCAAAGCATCTGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTG 5560 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || || || | ||| | || | || | ||| || | | ||||| ||| | Sbjct 5561 ATAATTTCAATAATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACC 5620 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||||||||||| ||||| || || | ||||| ||| || || || || | || Sbjct 5621 GCAAAATCACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCA 5680 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||| | || || ||||| || || | |||||| ||| ||||| || Sbjct 5681 GGCATAAGACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAGAAAATA 5740 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGG--ACCCGAACGAGCTGGCTTTGTCTTTAA 4728 || || || || ||||| || | |||| | ||| || ||| | || | || Sbjct 5741 CCCTCCACAGCAGCAAAAGCAA-TAATACGTTCACCAAAATTAGCCGATTTCGAGGA-AA 5798 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 |||| | ||||| | ||| || |||||| ||| || || | || || |||| Sbjct 5799 TCCAAGCCATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAA 5858 Query 4789 ATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 | | | | || | || | || | ||||||| | || ||||| | ||||||| Sbjct 5859 AGAGATAATCACGCTGCTCGC---GATCCTTAATATAACTATCAATTAGAATACTATACA 5915 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 ||||||| |||| |||||| || ||||| || || || || || || | || ||||| | Sbjct 5916 TTTCAGAGTGTACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAA 5975 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 |||| ||||| | | || | ||| || | ||||| || || || || || || | Sbjct 5976 CTTGTACTTCTTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAG 6035 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGTTTTTTCC 5022 |||| || || | |||||| || || || | |||| ||| | | ||| ||| || Sbjct 6036 CAAAGAAAGCTAGAACATGTGAAATGAAATGACGTTCATTGTCGG---TGAGTCTTTCCC 6092 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||| || ||||| | | ||| |||||||| ||||||||||| || ||||| || Sbjct 6093 AGTCGGAATTGTCTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAAGAAGCTTCGGC 6150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426570380285975