Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq82145 138 1e-27 seq10127 104 2e-17 seq43370 100 2e-16 seq10922 96.9 3e-15 >seq82145 Length=1636 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || ||||| ||||||||||| || |||| || || | Sbjct 1171 ATGCAAATCTTTGTTAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 1230 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| |||||| ||||| ||||| | || |||||| Sbjct 1231 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAA 1290 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| ||| ||||||||||||||||| || || | ||||||||| Sbjct 1291 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTATAAT 1350 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 |||||||||||||||||| | ||||| || || ||| |||| ||||||| Sbjct 1351 ATACAAAAAGAATCTACATTGCATTTGGTATTACGTTTGCGTGGTGGCA 1399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| || || || ||||| ||||| | || ||||| Sbjct 1399 ATGCAAATTTTCGTTAAAACATTAACGGGTAAAACAATTACATTAGAGGTTGAACCTTCG 1458 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || ||| ||||| ||||||||||| ||||| |||||| Sbjct 1459 GATACTATAGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 1518 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| || || || || ||||||||| ||| | |||| || || Sbjct 1519 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACTTTATCCGACTACAAC 1578 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || || || || || |||||| |||| ||||| Sbjct 1579 ATTCAAAAAGAATCCACCCTTCACTTGGTATTGCGTTTGCGTGGTGG 1625 >seq10127 Length=8452 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| || ||||| |||||||||||||| || ||| ||||| ||||| | Sbjct 7360 ATGCAGATTTTCGTTAAAACCTTGACCGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 7301 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || ||||| || || ||||| ||||| ||||| Sbjct 7300 GATACCATTGAGAACGTGAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGATCAG 7241 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | || |||||||||||||||||| || | | || || || Sbjct 7240 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGACGCACCCTTTCTGACTACAAC 7181 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || |||||||| |||||| |||| ||||| Sbjct 7180 ATCCAGAAGGAATCCACCCTCCATTTAGTATTGCGTTTGCGTGGTGG 7134 >seq43370 Length=3724 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 111094 TTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAA 111153 ||| | ||||| || || |||||||| || || || |||||||||||| ||||| || Sbjct 2356 TTATAGATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAG 2415 Query 111154 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111213 || ||| | ||| | || || ||||| ||||||||||| | ||| Sbjct 2416 CCTTCCGACACCATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGTATCCCCCCA 2475 Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111273 ||||||||| | | || | || || ||||||||||||||| | || || |||| Sbjct 2476 GATCAACAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGAC 2535 Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| ||||| || ||||||| || | ||||| || ||||| Sbjct 2536 TACAACATCCAAAAGGAATCCACTTTACATTTGGTACTCCGTCTTCGTGGTGG 2588 >seq10922 Length=8781 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| |||||||||||||| | || || || |||||||| | || || || Sbjct 3234 AATGCAGATTTTTGTCAAAACCCTAACGGGTAAGACCATTACTCTTGAGGTCGAGCCGTC 3175 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || || ||| | || ||| || ||| ||||||||||| |||| ||||| Sbjct 3174 GGACACTATTGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCA 3115 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | | |||| || || ||||||||||||||| | || | | ||||| || Sbjct 3114 ACAACGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGTCGTACCCTCTCGGATTACAA 3055 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| |||| ||||| | || || ||||| |||||||| || ||||| Sbjct 3054 TATTGAAAAGGAATCCATTCTGCACTTAGTATTGCGTCTTCGTGGTGG 3007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421337858630200