Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq74052 239 5e-58 seq14616 98.7 1e-15 >seq74052 Length=11856 Score = 239 bits (264), Expect = 5e-58 Identities = 476/695 (68%), Gaps = 14/695 (2%) Strand=Plus/Plus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 ||| || |||||||| || |||| ||||||| | | | || || ||||| | || || Sbjct 5452 ATCGGCCACAAATTCTATGTATTCTGACATCAATTTACAATTCATGCCTATCAAATTGAC 5511 Query 23403 TGGAATCGCATCATATAAG-AATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAA 23461 || | ||||| | |||| ||| || |||||| || || || | || |||| Sbjct 5512 GGGCAAAGCATC-TGTAAGGAATTCTTGTTCAATTTTCACCGCTTCGGTGATAATTT--- 5567 Query 23462 CAATAACT-TCTTC--ACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAAT 23518 |||||| | ||| | ||| || | | | |||| ||||||| ||| ||||||| Sbjct 5568 CAATAATTCTCTCCCGACTGGGACGTTGTACCAAATGTTTAAACATTAATACCGCAAAAT 5627 Query 23519 CACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTA 23578 ||||||||| || ||||| | |||||||||||| || ||||| | || ||||| | Sbjct 5628 CACAATGTAAACCCTCATCACGTGAAATCAATTCATTGGAGAATGTAAGACCAGGCATAA 5687 Query 23579 ATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAA 23638 || ||||| || | ||| || || | ||||| || |||||||||||||| | Sbjct 5688 GACCACGTTTCTTTAGCCAGAAGATGGAGGCAAAACTGCCACTGAAGAAAATACCCTCCA 5747 Query 23639 CAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC--ATTATAATCAGAAATCCAttt 23696 |||| ||||| || | || |||| |||||| | || ||| | |||||||| Sbjct 5748 CAGCAGCAAAAGCAATAATACGTTCACCAAAATTAGCCGATTTCGAG--GAAATCCAAGC 5805 Query 23697 ttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAA 23756 | | ||||| |||||| || ||| | || |||||||| || || |||||| | Sbjct 5806 CATAGCCCAATCAGCCTTACGCTTAACAGCCGGCATAGTTTCAATGGCATTAAAGAGATA 5865 Query 23757 AGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATG 23816 | | || ||| | ||||| |||||||||| | ||||||||||||||| || Sbjct 5866 ATCACGCTGCTCGCGATCCTTAATATAACTATCAATTAGAATACTATACATTTCAGAGTG 5925 Query 23817 AATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATC 23876 | |||||| || ||||| || || ||||| ||||| | || || | | ||| || || Sbjct 5926 TACATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGTGCCTCTGTAACTTGTACTTC 5985 Query 23877 ATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGC 23936 | | || | || | | | |||||| || ||||| ||||| ||||||||||||||| Sbjct 5986 TTGGGAGAAGCGTTCAACAAGATTTTCATTGACAATGCCATCGGAAGCAGCAAAGAAAGC 6045 Query 23937 AAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AATTTTTTCCAATCATTAATAT 23995 ||||||| | || ||||| | ||||| || | | | | ||| ||| || | | | Sbjct 6046 TAGAACATGTGAAATGAAATGACGTTCAT-TGTCGGTGAGTCTTTCCCAGTCGGAATTGT 6104 Query 23996 CTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 |||| || | ||| ||||| || || ||||||||| Sbjct 6105 CTTTGGAAAGATCCACTTCTTCTACAGTCCAAAAA 6139 >seq14616 Length=5376 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| |||||||||||||||||||| ||||| ||||| || ||| | || ||||| Sbjct 1444 GGTGTTTTACATACAAAATTTTGGATTTCCGATAACAAACACATTTATTTGGGCAGTGCC 1385 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTAT 139532 || ||||||||| |||| |||| || || |||||||| ||||| Sbjct 1384 AATATGGACTGGAGATCTTTAACACAGGTTAAAGAATTGGGTAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520887799905000