Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10127 122 6e-23 seq82145 104 2e-17 seq43370 91.5 1e-13 >seq10127 Length=8452 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| || || ||| |||||||||||||||||| || | | ||| | || || Sbjct 6923 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTC 6982 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || ||||||||||||||||| |||||||||| ||| | ||||||||| ||| Sbjct 6983 CAATTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTATCCTG 7042 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | || ||||| | | || || |||| || || || || Sbjct 7043 GATCTTAGCCTTGACGTTTTCAATAGTGTCCGAAGGCTCGACTTCCAAGGTGATGGTTTT 7102 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| |||||||||||||| Sbjct 7103 ACCGGTCAAGGTCTTTACGAAGATTTGCAT 7132 Score = 102 bits (112), Expect = 6e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| || | || || ||| ||||| ||||||||||| Sbjct 7127 TTGCATACCACCACGCAAACGCAATACTAAATGGAGGGTGGATTCCTTCTGGATGTTGTA 7186 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || |||| || || ||||| ||||||||||| |||||||| Sbjct 7187 GTCAGAAAGGGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATC 7246 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | ||||||||| ||| || || |||| | |||| | ||||| |||| | Sbjct 7247 TGGGGGAATACCTTCCTTATCCTGGATTTTAGCCTTC-ACGTTCTCAATGGTATCGGAAG 7305 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || || || || || | ||| || ||||| || ||||| Sbjct 7306 GTTCAACTTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTAACGAAAATCTGCAT 7360 >seq82145 Length=1636 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| |||||| ||| || ||||| |||||||| Sbjct 1632 TTGCATACCACCACGCAAACGCAATACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTA 1573 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| | ||| | || |||| |||||| || || || ||||||||||| ||||| Sbjct 1572 GTCGGATAAAGTGCGGCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATC 1513 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGG 44282 || || | |||||| || || || || |||| || || |||| || || | | Sbjct 1512 TGGGGGAATACCTTCTTTGTCTTGGAT-TTTAGCTTTAACATTTTCTATAGTATCCGAAG 1454 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||| | ||||| || || ||||| | || || ||||| ||||||||| Sbjct 1453 GTTCAACCTCTAATGTAATTGTTTTACCCGTTAATGTTTTAACGAAAATTTGCATG 1398 >seq43370 Length=3724 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||||||||||| |||| | || || || | || |||| || || || || || Sbjct 2552 TCCTTTTGGATGTTGTAGTCGGACAAGGTG-CGACCATCTTCCAATTGTTTACCAGCGAA 2494 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||| || ||||||| || | |||||| || || || || ||| | | Sbjct 2493 GATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTGGCCTTGACATT 2434 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| | || || |||| ||||| || || || || | || || || Sbjct 2433 TTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGAC 2374 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 2373 GAAGATCTGCAT 2362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359586431710275