Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2439 405 6e-108 seq79 210 3e-49 >seq2439 Length=24097 Score = 405 bits (448), Expect = 6e-108 Identities = 1227/1867 (66%), Gaps = 70/1867 (4%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || |||| || ||||| |||| | || || ||||| || || | ||| ||||| ||| Sbjct 3993 TTATCCACAGTAAATTGGATGGCATTGGCAGCTGGTTTAGTGCGCAAATAATACATCCCC 3934 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| || || | |||| | | ||||| || || ||||| ||| | || Sbjct 3933 GTTTTGAGGCCCATTTTCCAGGCATGGAAATGAATTGAAGTGAGTTTCCCATAGTTAGGT 3874 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 ||||| | | || || | |||||||||||||| |||||||| || | ||| || ||| Sbjct 3873 TCTGCCACGTAAATGTTGAATGATTGACTTTGATCAATGAAGGCCCCACGGTCAGCTGCC 3814 Query 52979 ATTTTTATGATCGTCTT----TTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAA 53033 |||| || || || || ||| |||||||| | |||||||| ||||| | || Sbjct 3813 ATTTCAATCATTGTTTTCACCTTG----ATTTCCCACACGGTTTTATACAACTCACG-AA 3759 Query 53034 TATCTTCTGGAAGGTTTG-----TATTCTGAATAGATCCACCATCTACCATAATCCTATT 53088 |||| || |||| ||| ||||||| | ||| ||| | | || | | || Sbjct 3758 TATCCTCAGGAA--TTTCCAGAATATTCTGCACAGAGCCATTGTTGGCAATTAATTTGTT 3701 Query 53089 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 53148 ||| || ||||||||||| | | || | | | | | | ||||| ||||| Sbjct 3700 CTTCATTTCATCATTCCAAAGGCGTAGTTCAGAGAGATCCTTTAACAGATGGCTGTTAAC 3641 Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||||| ||||| ||||| | || | || ||||| ||||| || || ||||| | Sbjct 3640 CACTTGGAATTCCCCAGAAAGAACACGACGGGTGTACATATTGGATGTGTAGGGTTCGAA 3581 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || |||||||| || | ||||||||| || || || || ||||| || ||||| | | Sbjct 3580 GGATTCATTATTGCCAAGAATTTGAGCCGTAGAAGCCGTTGGCATTGGAGCCACAAGCAG 3521 Query 53269 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 ||||| || ||| ||| | | || || | || | ||||||||||||||| Sbjct 3520 GGAATTTCGAACACC--ATGCTGAGCAATCTTTGCCTTCAATTCATCCCAATTCCAAAGA 3463 Query 53327 TCCGACGG--TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTAC 53380 |||| || | | | || ||||| || || ||||| | | Sbjct 3462 TCCGTTGGCTTTCTATTCCACATATCGTAC--TGCAGAATTCCCTTGCTTACTGGACTTC 3405 Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 || ||| || || |||||||| ||||||||| || |||||||| ||||| | Sbjct 3404 CATTGTAC----GTCTCATATGGTCCGAGCTTCTCAGCGAGCTCACAACTAGCCTCAAGA 3349 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG-ATCTTGTGCTTCCAGGCTATC 53499 || || || ||||||||||| ||||| | | || || ||||| ||||| |||||| Sbjct 3348 GCTCCATAGTAAATGGTTTCAAAGATTTGTTGGTTGAGTTTCTTG-GCTTCTTTGCTATC 3290 Query 53500 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 | |||| | |||||| | || || |||| |||||||| ||||| || || || Sbjct 3289 ATATGGGAGGCGCATGAGAATGTAAGCATCCGCTAGACCTTGAACTCCAATTCCAATCGG 3230 Query 53560 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 ||| |||| | |||| ||| | ||||| || | || || || || || ||||||| Sbjct 3229 TCTGTGTCGCATATTGGAGCGCTTTGCTTCGGGTACGGGGTAGTAGTTGATGTCTATAAC 3170 Query 53620 TTTATTGAGGTT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 53676 ||| ||||| || | ||||||| ||| | || ||| || || ||||||| | Sbjct 3169 TTTGTTGAGATTGCGTGTGACAAT--CTTCG-TGACGGACTTTAGCTTCTCAAAATCATA 3113 Query 53677 TTGTC-CATC---TATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTA 53732 ||| ||| | ||||||||| || | |||||| ||||| | ||| || || || | Sbjct 3112 -CGTCTTATCGGGCAGTACAAACATATTAAGTGCAATTGATGCTAAATTGCACACAGCAA 3054 Query 53733 CCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 ||||| | | | || ||||| | ||||| ||||| || || ||||| || || Sbjct 3053 TCTCATCCTTGGA--CGAATATTCAACGATCTCGGTGCAGAGGTTGCTACAGCGAATTGT 2996 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 || | ||| || ||||||||||| |||||| || ||||| || || || | ||||| Sbjct 2995 ACCAATATTCTGCTGATTACTCTTACGGTTACATGCGTCCTTGTACAGCATATACGGCGT 2936 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGA 53910 || ||||| | || || || || || ||| | | ||||| || || Sbjct 2935 TCCCGTTTCTACTTGACTTTGAATGATGGCAAACCAAAGATCTCGAGCTGGTACCTTACG 2876 Query 53911 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 |||| |||| |||||| ||| |||||| | ||| || || ||||| Sbjct 2875 AATGTACTGACCTTCTGCTTCGTACTTTGTGTACAATTTATTAAATTCTTCACCCCAGCA 2816 Query 53971 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030 || ||||||||| || | | || ||||| | ||| || || || || || Sbjct 2815 ATCAAACAATCCAGGGCACTTGTTAGGGCACATGAGACTCCATTCACCATCCTCGGAGAC 2756 Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTT 54089 || | |||||| | |||||||||||| || || ||| || ||||||| || || || Sbjct 2755 ACGCTGCATAAATAAATCAGGAATCCAGAGCGC-ATAGAAGAGATCTC--GTGCT-CGTG 2700 Query 54090 CC---TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 || || || || |||||||||||||| || ||||| | | ||||| |||||| | Sbjct 2699 CCTTTTCCTTACCGGTATTCTTTTTAAGGTCTAGGAATTCAAAGATATCCCCATGCCAGG 2640 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206 |||| | |||||| | | | || || || || || || || ||||| | ||| | | Sbjct 2639 GTTCAAGGTATATTGCAAAGGCACCTGGGCGCTTATTCCCACCTTGATCAACGTAGCAGG 2580 Query 54207 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266 | || | || || || | | ||| || | | ||||| |||| |||||||| || | Sbjct 2579 CAGTAGTGTTGTAGACGCGAAGCATCGGTACGAGTCCATTCGATGTGCCATTGGTTCCAG 2520 Query 54267 AGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATT 54325 || | || |||| || ||||| | | | | | | ||| ||||| ||||| Sbjct 2519 CAATGTGACTACCACGAGCTCGAAT-GCAGTGAGTATTAACACCAATCCCTCCTGCAGAC 2461 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 || ||||||| |||||| |||| | ||||| ||||| || || ||||| ||||| | Sbjct 2460 TTTGAGATTAGAGCGCATTGTTTCAGTGTATCGTAGATACCATCAATACTGTCATCAGCC 2401 Query 54386 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG-ACT--AGTTCCCGCATTAAATAAG 54442 ||| || || ||||| |||| | | ||| | ||| ||| | || ||| | Sbjct 2400 ATGGACAGGAGGAAACA---AGACGATAGCTGAGGCACTGGAGTGGCAGCTGCAAAGAGT 2344 Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAG 54502 || || || |||||||| || | || || || || ||||||||||| || |||| Sbjct 2343 GTTGGTGATGCGTGCGTGAAATACCGTTGTGATAGAAGGTTGTACGTCTCAATGGCTGCA 2284 Query 54503 TCTATATCCCATT--GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 | || | |||| |||||||| || | || ||||| | ||| ||||| || |||| Sbjct 2283 GCAATGT--CATTCCCGTGAATTCCCACAGATACTCGCATCAGCATATGCTGGGGCCTTT 2226 Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 54620 || |||| || | || |||| || || ||| | || | || || || ||||||| Sbjct 2225 CAGCGATTTTCCCGCCGATCTTCATTAAATATGATCTCTCGAGTGTCTTGAAGCCAAAAT 2166 Query 54621 AGTTGTA 54627 || |||| Sbjct 2165 AGCTGTA 2159 >seq79 Length=216850 Score = 210 bits (232), Expect = 3e-49 Identities = 409/604 (68%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || || ||||| | ||| || || || ||||| || ||||| || | ||| | || Sbjct 76182 TGCTTGAACATTAGACACGCAAAGTCACAGTGGAGGCCCTCATCGCGTGAAATGAGCTCA 76241 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 ||| ||||||||||||||||| | ||| || || ||||| || || || || || Sbjct 76242 TTGCTGAACGTGAGTCCGGGCATGATGCCGCGTGACTTGAGCCAGAAGATTGAGGCGAAG 76301 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || |||||||| || || ||||||||||||||||| | ||||| || || Sbjct 76302 CTACCGCTGAAGAAAATCCCCTCAACTGCCGCAAAGGCAATGACCCTTTCGCCGAAATTT 76361 Query 24300 GC------GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 24353 || |||| || ||||||| | ||||||||||||||||| || ||||| ||| Sbjct 76362 GCTTCCTGGCTGGCA---ATCCACTGGAGTGCCCAATCGGCCTTCTTCTTCACACACGGC 76418 Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 | ||||| || ||||| ||||| ||| || || | ||| | || |||||| Sbjct 76419 AGCGTCTCGATGGCATTGAAGAGGAAGTCCTTCTCCTGCGGATCCCGTATGTACGTATCA 76478 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 || | | ||| |||||||| ||| | || || ||||| || || || || ||||| Sbjct 76479 ATGAGCAAACTGTACATTTCGCTATGTACATTCTCCATGGCAATCTGGAAGCCATAGAAG 76538 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533 ||| ||||| || || || || || || || || || | | ||| ||||| || Sbjct 76539 AATCGTGCCTCTGTGATTTGCACCTCCTGACTGAAGCGCTCCACGAGATTCTCATTTACA 76598 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 24593 || || || || ||||| || |||| || || | || || | ||||| Sbjct 76599 ATCCCATCGGATGCCGCAAAGAATGCCAGGACGTGGCTAATGAATTTCCTTTCGCAATCC 76658 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 | | |||||| | || ||||| |||| || ||||| || |||||||||||| Sbjct 76659 TTCAAAGCATTCCAGTGATCCATATCCCGGGATAGGTCTACTTCCTCAACTGTCCAAAAT 76718 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 24713 || ||||| |||||||| ||||| | ||| | || || |||||||| || || | |||| Sbjct 76719 GAGGCCTCGGCCTTTTTGTACATCTCCCACACATCGTGGTATTGAATGGGGAAGACAACA 76778 Query 24714 AATC 24717 |||| Sbjct 76779 AATC 76782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 |||||| | || ||||| |||| || ||||| || |||||||||||||| ||||| Sbjct 78676 ATTCCAGTGATCCATATCCCGGGATAGGTCTACTTCCTCAACTGTCCAAAATGAGGCCTC 78735 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 |||||||| ||||| | ||| | || || |||||||| || || | |||||||| Sbjct 78736 GGCCTTTTTGTACATCTCCCACACATCGTGGTATTGAATGGGGAAGACAACAAATC 78791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593636015031360