Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1176 109 4e-19 seq24 104 2e-17 seq825 86.0 4e-12 >seq1176 Length=25388 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || ||| ||||| |||||||||||||||| ||| | || Sbjct 17281 AGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGCCCATCT 17340 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| ||||| |||||||| || || | || || ||||| Sbjct 17341 TCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGCGGAATGCCTTCTTTGTCC 17400 Query 34298 GCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| || |||| || | || | ||| | || || || || | ||||| || Sbjct 17401 TGAAT-TTTAGCTTTTACATTCTCGATGGTATCTGACGGCTCAACCTCGAGGGTGATCGT 17459 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || ||||| ||||||||||||||||||||| Sbjct 17460 CTTCCCTGTGAGTGTTTTCACAAAGATCTGCATC 17493 >seq24 Length=280856 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| || ||||| ||||| ||| ||| | || || | |||||||| || || Sbjct 39540 TTCCTTCTGAATATTGTAATCGGAGAGCGTACGCCCATCCTCGAGTTGCTTGCCAGCAAA 39481 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||||||||| ||| | || ||||||||| |||||| ||| | || Sbjct 39480 GATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATT 39421 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| ||| | | ||||| || | |||||||| || || || | ||| ||||| Sbjct 39420 CTCAATCGTATCAGATGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAAAGTCTTCAC 39361 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 39360 AAAGATCTGCAT 39349 >seq825 Length=38805 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| || | || || ||||| |||||||||||||| Sbjct 11870 CCACCACGAAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 11929 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | |||||| || || || ||||| |||||||| || || Sbjct 11930 AGGGTGCGCCCATCCTCTAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAGGG 11989 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| || || || || ||| | || | || | ||| | | |||||| Sbjct 11990 ATTCCCTCTTTATCCTGAATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGACC 12049 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || |||||||||||||| || |||||||| Sbjct 12050 TCAAGGGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAAATCTGCAT 12096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323026593441920