Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1371 116 7e-21 seq2439 93.3 8e-14 >seq1371 Length=16595 Score = 116 bits (128), Expect = 7e-21 Identities = 406/620 (65%), Gaps = 19/620 (3%) Strand=Plus/Minus Query 35168 GGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCA 35227 |||||||| || || ||||| | |||||| | ||| | | || | ||| | ||| Sbjct 9272 GGAACTCTGTCAATCTTTGGGGCACAAATGCGCTTCAATTTGCGCAATGACGTCTTCCCA 9213 Query 35228 GTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATC 35287 | || || || |||| | | |||||| | || |||| || || || |||||||| Sbjct 9212 TTGCTGACCACGAAGAGAGTCTTCTGGCGCGGTGTTGCTGAGGAGCTTATTTGGTTCATA 9153 Query 35288 AGGGGCAATACAGACGCCAAAGAATTGGCCA-AGAAGAAGA-TA-CAC-ATCTGGAACGC 35343 | ||| ||| || || ||| || | || ||||| || ||| || ||||| | Sbjct 9152 CGCGGCTCTACGGATGCACGAGA----GCTACAGCAGAAGGGTATCACCATTTGGAATGG 9097 Query 35344 TAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTT 35403 ||| | | ||||| | | |||| | || || | ||| | | |||||| ||| | Sbjct 9096 TAACAGTACCCGGGAGTATCTGGATGAGATGGGCTTCAAGGATCGCGAAGAGGGTGATCT 9037 Query 35404 GGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCT-- 35461 ||| || || || ||||||||||||||||| |||||||| || ||| ||| | Sbjct 9036 GGGGCCTGTTTATGGATTCCAATGGCGTCACTTTGGTGCCCCCTACCGTACATGTCGTGA 8977 Query 35462 TCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA 35521 | || || || |||| | |||||| | | | ||||| | | || Sbjct 8976 TACG--TACGACGGCCAGGGG-TGGATCAACTTCAGGAGGTGATAAAGCTTATCCGCGAG 8920 Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 || || |||| | | || ||||||| |||||||||||| ||||||| | | | ||| Sbjct 8919 AAGCCCACTGATCGTCGAATCATTATGAGTGCATGGAATCCTGTGGATCTCCCCATAATG 8860 Query 35582 GCTCTTCCTCCATGCCACATGAC-TGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTG 35640 || || || || || ||| || | || ||||| || ||||| |||||||| | ||||| Sbjct 8859 GCGCTCCCACCCTGTCAC-TGCCTTGTACAATTCTACGTGGCCAATGGAGAGCTCTCGTG 8801 Query 35641 CCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCA 35698 ||| ||||||| || ||| || ||| || |||| || || ||||| ||||| Sbjct 8800 CCAAATGTATCAACGTTCAGCCGACATG--GGACTGGGGGTACCATTCAACATTGCCAGC 8743 Query 35699 TACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATC 35758 || |||| || || | |||| ||| || | ||| || || ||||| || | Sbjct 8742 TATGCTCTCCTCACACGAATGATTGCCCAAATCACAGATCTCAAGCCAGGAGACTTCGTG 8683 Query 35759 CTCACTCTTGGTGACGCACA 35778 | ||| || ||||| || || Sbjct 8682 CACACCCTCGGTGATGCTCA 8663 >seq2439 Length=24097 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 93570 GTTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTGGACGTTAAAGG 93629 ||| |||||||||||| || ||||| ||| ||| | ||||| ||||| || | || Sbjct 3646 GTTAACCACTTGGAATTCCCCAGAAAGAACACGACGGGTGTACATATTGGATGTGTAGGG 3587 Query 93630 CTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAAC 93689 || ||||||||| ||||| || || || || || || || || ||||| ||||| || Sbjct 3586 TTCGAAGGATTCATTATTGCCAAGAATTTGAGCCGTAGAAGCCGTTGGCATTGGAGCCAC 3527 Query 93690 AAACATTGAATTGTGAACACCATACT 93715 || || ||||| ||||||||| || Sbjct 3526 AAGCAGGGAATTTCGAACACCATGCT 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989437785253060