Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2439 426 2e-114 seq79 214 2e-50 >seq2439 Length=24097 Score = 426 bits (472), Expect = 2e-114 Identities = 1251/1906 (66%), Gaps = 64/1906 (3%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || |||| || ||||| |||| | || || ||||| || || | ||| ||||| ||| Sbjct 3993 TTATCCACAGTAAATTGGATGGCATTGGCAGCTGGTTTAGTGCGCAAATAATACATCCCC 3934 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| || || | |||| | | ||||| || || ||||| ||| | || Sbjct 3933 GTTTTGAGGCCCATTTTCCAGGCATGGAAATGAATTGAAGTGAGTTTCCCATAGTTAGGT 3874 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 ||||| | | || || | |||||||||||||| |||||||| || | ||| || ||| Sbjct 3873 TCTGCCACGTAAATGTTGAATGATTGACTTTGATCAATGAAGGCCCCACGGTCAGCTGCC 3814 Query 62217 ATTTTTATGATCGTCTT----TTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAA 62271 |||| || || || || ||| |||||||| | |||||||| ||||| | || Sbjct 3813 ATTTCAATCATTGTTTTCACCTTG----ATTTCCCACACGGTTTTATACAACTCACG-AA 3759 Query 62272 TATCTTCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTACCATAATCCTATT 62326 |||| || |||| ||| ||||||| | || ||| | | || | | || Sbjct 3758 TATCCTCAGGAA--TTTCCAGAATATTCTGCACAGAGCCATTGTTGGCAATTAATTTGTT 3701 Query 62327 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAAC 62386 ||| || ||||||||||| | | || | | | | | | ||||| |||||| Sbjct 3700 CTTCATTTCATCATTCCAAAGGCGTAGTTCAGAGAGATCCTTTAACAGATGGCTGTTAAC 3641 Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||||||||||| ||||| | || | || ||||| ||||| || || ||||| | Sbjct 3640 CACTTGGAATTCCCCAGAAAGAACACGACGGGTGTACATATTGGATGTGTAGGGTTCGAA 3581 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || |||||||| || | ||||||||| || || || || ||||| || ||||| | | Sbjct 3580 GGATTCATTATTGCCAAGAATTTGAGCCGTAGAAGCCGTTGGCATTGGAGCCACAAGCAG 3521 Query 62507 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 ||||| || ||| ||| | | || || | || | | ||||||||||||||| Sbjct 3520 GGAATTTCGAACACC--ATGCTGAGCAATCTTTGCCTTCAATTCATCCCAATTCCAAAGA 3463 Query 62565 TCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGA 62620 |||| || | || || ||||| || || ||||| | | | Sbjct 3462 TCCGTTGGCTTTCTATTCCACATATCGTACTGCAGAATTCCCTTGCTTACTGGACTTCCA 3403 Query 62621 TCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGC 62680 | ||| || ||||||||||| ||||||||| || | |||||| ||||| | || Sbjct 3402 TTGTAC----GTCTCATATGGTCCGAGCTTCTCAGCGAGCTCACAACTAGCCTCAAGAGC 3347 Query 62681 ACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAG-ATCTTGTGCTTCCGGGCTATCAA 62739 || || ||||||||||||||||| | | || || ||||| ||||| ||||||| Sbjct 3346 TCCATAGTAAATGGTTTCAAAGATTTGTTGGTTGAGTTTCTTG-GCTTCTTTGCTATCAT 3288 Query 62740 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62799 |||| | |||||| | || ||||||| |||||||| ||||| || || |||| Sbjct 3287 ATGGGAGGCGCATGAGAATGTAAGCATCCGCTAGACCTTGAACTCCAATTCCAATCGGTC 3228 Query 62800 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62859 | |||| | |||| ||| | ||||| || | || || || || || ||||||| || Sbjct 3227 TGTGTCGCATATTGGAGCGCTTTGCTTCGGGTACGGGGTAGTAGTTGATGTCTATAACTT 3168 Query 62860 TATTGAGATT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62916 | |||||||| | ||||||| ||| | || ||| || || ||||||| | Sbjct 3167 TGTTGAGATTGCGTGTGACAAT--CTTCG-TGACGGACTTTAGCTTCTCAAAATCATACG 3111 Query 62917 GCCCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCT 62973 | ||| | ||||||||| || | ||||| ||||| | ||| ||||| || | || Sbjct 3110 TCTTATCGGGCAGTACAAACATATTAAGTGCAATTGATGCTAAATTGCACACAGCAATCT 3051 Query 62974 CAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCC 63031 ||| | | | || ||||| | ||||| ||||| || || ||||| || || || Sbjct 3050 CATCCTTGGA--CGAATATTCAACGATCTCGGTGCAGAGGTTGCTACAGCGAATTGTACC 2993 Query 63032 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 63091 | ||| || ||||||||||| |||||| || ||||| || || || | || || || Sbjct 2992 AATATTCTGCTGATTACTCTTACGGTTACATGCGTCCTTGTACAGCATATACGGCGTTCC 2933 Query 63092 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 63151 ||||| | ||| || || || || ||| | ||||||| || || | Sbjct 2932 CGTTTCTACTTGACTTTGAATGATGGCAAACCAAAGATCTCGAGCTGGTACCTTACGAAT 2873 Query 63152 GTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63211 ||| | |||| |||||| || |||||| | || || || ||||| || Sbjct 2872 GTACTGACCTTCTGCTTCGTACTTTGTGTACAATTTATTAAATTCTTCACCCCAGCAATC 2813 Query 63212 GTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63271 ||||| ||| || | | || ||||| | ||| || || || || || || Sbjct 2812 AAACAATCCAGGGCACTTGTTAGGGCACATGAGACTCCATTCACCATCCTCGGAGACACG 2753 Query 63272 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCC- 63329 | |||||| | |||||||||||| || || ||| || ||||||| || || || || Sbjct 2752 CTGCATAAATAAATCAGGAATCCAGAGCGC-ATAGAAGAGATCTCGTGCTC---GTGCCT 2697 Query 63330 --TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63387 || || || |||||||||||||| || ||||| | | ||||| |||||| |||| Sbjct 2696 TTTCCTTACCGGTATTCTTTTTAAGGTCTAGGAATTCAAAGATATCCCCATGCCAGGGTT 2637 Query 63388 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63447 | | |||||| || | | || || || || || || || ||||| | ||| | || | Sbjct 2636 CAAGGTATATTGCAAAGGCACCTGGGCGCTTATTCCCACCTTGATCAACGTAGCAGGCAG 2577 Query 63448 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63507 | | || || || | | ||| || | | || || ||| | |||||||| || | | Sbjct 2576 TAGTGTTGTAGACGCGAAGCATCGGTACGAGTCCATTCGATGTGCCATTGGTTCCAGCAA 2517 Query 63508 TATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTA 63566 | | | |||| || ||||| | | | | | | ||| || || ||||| || Sbjct 2516 TGTGACTACCACGAGCTCGAAT-GCAGTGAGTATTAACACCAATCCCTCCTGCAGACTTT 2458 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 ||||||| |||||| |||| | || || ||||| || || || || ||||| |||| Sbjct 2457 GAGATTAGAGCGCATTGTTTCAGTGTATCGTAGATACCATCAATACTGTCATCAGCCATG 2398 Query 63627 TTAAGTAGAAAACAGCTAGACATTTGGTGACG---AGTAGTTCCCGCATTAAATAAGGTA 63683 || || ||||| |||| | | ||| | | ||| | || ||| | || Sbjct 2397 GACAGGAGGAAACA---AGACGATAGCTGAGGCACTGGAGTGGCAGCTGCAAAGAGTGTT 2341 Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743 || || |||||||| || | || || || || |||||||||||||| |||| | Sbjct 2340 GGTGATGCGTGCGTGAAATACCGTTGTGATAGAAGGTTGTACGTCTCAATGGCTGCAGCA 2281 Query 63744 ATATCCCATT--GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63801 || | |||| |||||||| || | || ||||| | ||| ||||| || |||||| Sbjct 2280 ATGT--CATTCCCGTGAATTCCCACAGATACTCGCATCAGCATATGCTGGGGCCTTTCAG 2223 Query 63802 CAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 | ||||| | || |||| || || ||| | || | || || || ||||||||| Sbjct 2222 CGATTTTCCCGCCGATCTTCATTAAATATGATCTCTCGAGTGTCTTGAAGCCAAAATAGC 2163 Query 63862 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 |||| | |||| || || | | || ||||||| ||||| || Sbjct 2162 TGTACCCATAGTCCCGATCATGCACGATGGCCGAATTAAGCTTCTC 2117 >seq79 Length=216850 Score = 214 bits (236), Expect = 2e-50 Identities = 410/604 (68%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 || || ||||| | ||| || || || ||||| || ||||| || | ||| | || Sbjct 76182 TGCTTGAACATTAGACACGCAAAGTCACAGTGGAGGCCCTCATCGCGTGAAATGAGCTCA 76241 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 || ||||||||||||||||| | ||| || || ||||| || || || ||||| Sbjct 76242 TTGCTGAACGTGAGTCCGGGCATGATGCCGCGTGACTTGAGCCAGAAGATTGAGGCGAAG 76301 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 ||| ||||| || || || ||||| ||||||||||| | || || || || Sbjct 76302 CTACCGCTGAAGAAAATCCCCTCAACTGCCGCAAAGGCAATGACCCTTTCGCCGAAATTT 76361 Query 33747 GC------GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 || |||| || ||||||| | ||||||||||||||||| || ||||| ||| Sbjct 76362 GCTTCCTGGCTGGCA---ATCCACTGGAGTGCCCAATCGGCCTTCTTCTTCACACACGGC 76418 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 | ||| || |||||||| ||||| ||| || || | ||| | || ||||| Sbjct 76419 AGCGTCTCGATGGCATTGAAGAGGAAGTCCTTCTCCTGCGGATCCCGTATGTACGTATCA 76478 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 || | | ||| |||||||| ||| | || || ||||| ||||| || || ||||| Sbjct 76479 ATGAGCAAACTGTACATTTCGCTATGTACATTCTCCATGGCAATCTGGAAGCCATAGAAG 76538 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33980 ||| ||||| || || ||||| || || || || || | | ||| ||||| || Sbjct 76539 AATCGTGCCTCTGTGATTTGCACCTCCTGACTGAAGCGCTCCACGAGATTCTCATTTACA 76598 Query 33981 ATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 34040 || ||||| || ||||| || |||| || || | || || | ||||| Sbjct 76599 ATCCCATCGGATGCCGCAAAGAATGCCAGGACGTGGCTAATGAATTTCCTTTCGCAATCC 76658 Query 34041 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 | | |||||| | || ||||| |||| || ||||| || |||||||||||| Sbjct 76659 TTCAAAGCATTCCAGTGATCCATATCCCGGGATAGGTCTACTTCCTCAACTGTCCAAAAT 76718 Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 || ||||| |||||||| ||||| | ||| | || || ||||| || ||||| | |||| Sbjct 76719 GAGGCCTCGGCCTTTTTGTACATCTCCCACACATCGTGGTATTGAATGGGGAAGACAACA 76778 Query 34161 AATC 34164 |||| Sbjct 76779 AATC 76782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 |||||| | || ||||| |||| || ||||| || |||||||||||||| ||||| Sbjct 78676 ATTCCAGTGATCCATATCCCGGGATAGGTCTACTTCCTCAACTGTCCAAAATGAGGCCTC 78735 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 |||||||| ||||| | ||| | || || ||||| || ||||| | |||||||| Sbjct 78736 GGCCTTTTTGTACATCTCCCACACATCGTGGTATTGAATGGGGAAGACAACAAATC 78791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629726811792960