Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1176 98.7 1e-15 seq2439 86.0 6e-12 >seq1176 Length=25388 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || ||| || ||| | | ||||| ||||| || || Sbjct 17296 GTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGCCCATCTTCCAGCTGCTTCCCG 17355 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| ||||| |||||||| || || |||||||||||||| ||| |||| | ||| Sbjct 17356 GCGAAGATGAGACGCTGCTGATCTGGCGGAATGCCTTCTTTGTC-CTGAATTTTAGCTTT 17414 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | || || | ||||| ||||| | ||| | |||||| || || | || Sbjct 17415 TACATTCTCGATGGTATCTGACGGCTCAACCTCGAGGGTGATCGTCTTCCCTGTGAGTGT 17474 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || || ||||| Sbjct 17475 TTTCACAAAGATCTGCAT 17492 >seq2439 Length=24097 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 || |||||||| || |||||| || || || || ||||| ||||| ||||| ||| Sbjct 3987 ACAGTAAATTGGATGGCATTGGCAGCTGGTTTAGTGCGCAAATAATACATCCCCGTTTTG 3928 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGT-AGGGTCGGC 152839 ||||| || |||| | | | || | || | | || ||| ||| ||| || || Sbjct 3927 AGGCCCATTTTCCAGGCATGGAAATGAATTGAAGTGAGTTTC-CCATAGTTAGGTTCTGC 3869 Query 152840 CATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899 || ||| | ||| || ||||||||||||||||| || || || | || |||||||| || Sbjct 3868 CACGTAAATGTTGAATGATTGACTTTGATCAATGAAGGCCCCACGGTCAGCTGCCATTTC 3809 Query 152900 GATCAT 152905 ||||| Sbjct 3808 AATCAT 3803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495992492374400