Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2439 100 3e-16 seq1176 96.9 4e-15 >seq2439 Length=24097 Score = 100 bits (110), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 156143 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 156202 || |||||||| | |||||| || || ||||| ||||| ||||| || |||||| Sbjct 3987 ACAGTAAATTGGATGGCATTGGCAGCTGGTTTAGTGCGCAAATAATACATCCCCGTTTTG 3928 Query 156203 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTT-TGC 156261 ||||| ||||| | | | || | || | | ||| || ||| |||| ||| Sbjct 3927 AGGCCCATTTTCCAGGCATGGAAATGAATTGAAGTGAGTTTCC-CATAGTTAGGTTCTGC 3869 Query 156262 CATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTC 156321 || ||| | |||||| |||||||||||||| || || || || | ||| ||||||||||| Sbjct 3868 CACGTAAATGTTGAATGATTGACTTTGATCAATGAAGGCCCCACGGTCAGCTGCCATTTC 3809 Query 156322 AATCATATATTTTC-CATTGTTCTCCCA 156348 |||||| | ||||| | ||| | ||||| Sbjct 3808 AATCAT-TGTTTTCACCTTGATTTCCCA 3782 >seq1176 Length=25388 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 ||| ||||| || || |||||||| ||| || ||| | | ||||| || || || || Sbjct 17295 TGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGCCCATCTTCCAGCTGCTTCCC 17354 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || |||| ||||| |||||||| || || |||||||||||||| |||||| ||| Sbjct 17355 GGCGAAGATGAGACGCTGCTGATCTGGCGGAATGCCTTCTTTGTCCTGAATTTTAGCTTT 17414 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 || | || | || || | || || || || | || | |||||| || || | ||| Sbjct 17415 TACATTCTCGATGGTATCTGACGGCTCAACCTCGAGGGTGATCGTCTTCCCTGTGAGTGT 17474 Query 143167 TTTTACGAATATTTGCAT 143184 ||| || || || ||||| Sbjct 17475 TTTCACAAAGATCTGCAT 17492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506941313874240