Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq825 141 2e-28 seq1176 140 7e-28 seq24 125 2e-23 >seq825 Length=38805 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || ||||| || || || Sbjct 11900 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCTAGCTGCTTCCCG 11959 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| ||||| |||||||||||||| || || || Sbjct 11960 GCAAAGATGAGACGCTGCTGATCCGGAGGGATTCCCTCTTTATCCTGAATTTTCGCCTTG 12019 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| ||||| || || || ||||| || || || ||| Sbjct 12020 ACATTTTCAATTGTATCCGAGGGTTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGAGTT 12079 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 12080 TTCACGAAAATCTGCATTTTG 12100 >seq1176 Length=25388 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| ||||| ||||| || || ||||| || | || | || ||| Sbjct 17281 AGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGCCCATCT 17340 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| ||||| || || || |||||||| ||| Sbjct 17341 TCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGCGGAATGCCTTCTTTGTCC 17400 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||||||||| || | |||||| || || ||||| || || || ||| Sbjct 17401 TGAATTTTAGCTTTTACATTCTCGATGGTATCTGACGGCTCAACCTCGAGGGTGATCGTC 17460 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| ||||| |||||||| Sbjct 17461 TTCCCTGTGAGTGTTTTCACAAAGATCTGCAT 17492 >seq24 Length=280856 Score = 125 bits (138), Expect = 2e-23 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| ||||||||||| || || || || || | || || Sbjct 39558 AGAACGAGATG--AGGTAGATTCCTTCTGAATATTGTAATCGGAGAGCGTACGCCCATCC 39501 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || |||||||| || | | ||| || || || || || || || || ||| Sbjct 39500 TCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 39441 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||||||| || ||||| || | ||||| || || ||||| || || || ||| Sbjct 39440 TGGATCTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCGACCTCAAGAGTGATGGTC 39381 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | || || ||||| ||||||||| Sbjct 39380 TTACCCGTTAAAGTCTTCACAAAGATCTGCATT 39348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151228276568656