Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1131 176 7e-40 seq539 176 7e-40 seq9476 170 3e-38 seq183 170 3e-38 >seq1131 Length=77803 Score = 176 bits (194), Expect = 7e-40 Identities = 187/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || ||||| ||||||||||| |||||||| || |||||||| Sbjct 12964 TCTACGTGATAACATCCAGGGTATCACGAAGCCAGCTATTCGTCGTCTTGCACGTCGTGG 12905 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| |||| || || |||| || |||| ||||| ||| | ||| | || Sbjct 12904 TGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACTCGTGGTGTCCTCAAGGTATT 12845 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| |||||||| ||||| | || ||||| ||||| || | ||||| || Sbjct 12844 CCTTGAGAACGTTATCCGGGATGCAGTGACATACACCGAACACGCCAAGAGGAAGACAGT 12785 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| | ||||| | ||||| || |||| || ||||| |||| | |||||||| || Sbjct 12784 CACCGCAATGGACGTTGTCTACGCTCTGAAGCGCCAAGGACGTACTCTATATGGTTTCGG 12725 Query 16693 AAGTTAA 16699 ||||| Sbjct 12724 CGGTTAA 12718 >seq539 Length=75501 Score = 176 bits (194), Expect = 7e-40 Identities = 204/274 (74%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | || |||| | ||| || |||||||||||||| ||||| |||||||||||| Sbjct 11182 GCCAAGAGACACCGCAAAGTTCTACGTGATAACATCCAAGGTATCACAAAGCCAGCTATC 11123 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| |||| || || |||| || |||| | Sbjct 11122 CGTCGTCTTGCACGTCGTGGTGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACT 11063 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || ||||||| ||| || |||| ||||||| | || || || Sbjct 11062 CGTGGTGTCCTCAAAGTCTTCCTGGAGAATGTCATCCGTGATGCTGTGACATACACTGAA 11003 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| | |||||| | || || || |||| || ||||| Sbjct 11002 CACGCCAAGAGGAAGACAGTCACGGCAATGGATGTTGTGTACGCCCTGAAGCGCCAAGGA 10943 Query 16673 CGTAAGATTTATGGTTTTGGAAGTT-AATCTTCT 16705 || | | || ||||| || ||| |||||||| Sbjct 10942 CGCACTCTGTACGGTTTCGGTGGTTAAATCTTCT 10909 >seq9476 Length=2579 Score = 170 bits (188), Expect = 3e-38 Identities = 203/274 (74%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | || |||| | ||| || |||||||||||||| ||||| |||||||||||| Sbjct 622 GCCAAGAGACACCGCAAAGTTCTACGTGATAACATCCAAGGTATCACAAAGCCAGCTATC 563 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| |||| || || | || || |||| | Sbjct 562 CGTCGTCTTGCACGTCGTGGTGGCGTGAAGCGTATCTCCGGGCTGATATACGAGGAGACT 503 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || ||||||| ||| || |||| ||||||| | || || || Sbjct 502 CGTGGTGTCCTCAAAGTCTTCCTGGAGAATGTCATCCGTGATGCTGTGACATACACTGAA 443 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| | |||||| | || || || |||| || ||||| Sbjct 442 CACGCCAAGAGGAAGACAGTCACGGCAATGGATGTTGTGTACGCCCTGAAGCGCCAAGGA 383 Query 16673 CGTAAGATTTATGGTTTTGGAAGTT-AATCTTCT 16705 || | | || ||||| || ||| |||||||| Sbjct 382 CGCACTCTGTACGGTTTCGGTGGTTAAATCTTCT 349 >seq183 Length=181677 Score = 170 bits (188), Expect = 3e-38 Identities = 203/274 (74%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | || |||| | ||| || |||||||||||||| ||||| |||||||||||| Sbjct 179089 GCCAAGAGACACCGCAAAGTTCTACGTGATAACATCCAAGGTATCACAAAGCCAGCTATC 179148 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || |||||| |||| || || |||| || |||| | Sbjct 179149 CGTCGTCTTGCACGTCGTGGTGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACT 179208 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || ||||||| ||| || |||| ||||||| | || || || Sbjct 179209 CGTGGTGTCCTCAAAGTCTTCCTGGAGAATGTCATCCGTGATGCTGTGACATACACTGAA 179268 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| | ||||| | || || || |||| || ||||| Sbjct 179269 CACGCCAAGAGGAAGACAGTCACGGCAATGGACGTTGTGTACGCCCTGAAGCGCCAAGGA 179328 Query 16673 CGTAAGATTTATGGTTTTGGAAGTT-AATCTTCT 16705 || | | || ||||| || ||| |||||||| Sbjct 179329 CGCACTCTGTACGGTTTCGGTGGTTAAATCTTCT 179362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064656211676