Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq825 167 2e-36 seq24 107 2e-18 seq1176 102 8e-17 seq79 96.9 3e-15 >seq825 Length=38805 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||||||| ||||| | ||| |||||||| || |||||||| ||| Sbjct 11870 CCACCACGAAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 11929 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| |||||||||||||| || || |||| | ||||||||| ||||||||| Sbjct 11930 AGGGTGCGCCCATCCTCTAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAGGG 11989 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| ||||| || |||||| ||||| | || | ||||| | || |||| Sbjct 11990 ATTCCCTCTTTATCCTGAATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGACC 12049 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || |||||||| |||||||||||||| Sbjct 12050 TCAAGGGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAAATCTGCAT 12096 >seq24 Length=280856 Score = 107 bits (118), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | ||| ||| || ||||| ||||| ||||||||| Sbjct 39574 GCCACCACGAAGACGGAGAACGAGATGA--GGTAGATTCCTTCTGAATATTGTAATCGGA 39517 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || ||| ||||| || |||||||| || |||| |||||||||||||| || || Sbjct 39516 GAGCGTACGCCCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 39457 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||| | | ||| | ||||| | | ||||| Sbjct 39456 AATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCGAC 39397 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| |||| ||| || || || |||||||| Sbjct 39396 CTCAAGAGTGATGGTCTTACCCGTTAAAGTCTTCACAAAGATCTGCAT 39349 >seq1176 Length=25388 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | || || ||||| || |||||||| ||| | Sbjct 17266 CCACCACGAAGACGGAGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 17325 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| || || |||||||| || ||| |||| | ||||||||| || || || Sbjct 17326 AATGTACGCCCATCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGCGGA 17385 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || || | | ||| | ||||| | | ||| | Sbjct 17386 ATGCCTTCTTTGTC-CTGAATTTTAGCTTTTACATTCTCGATGGTATCTGACGGCTCAAC 17444 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || ||||| || || |||||||| Sbjct 17445 CTCGAGGGTGATCGTCTTCCCTGTGAGTGTTTTCACAAAGATCTGCAT 17492 >seq79 Length=216850 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 46085 TGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGC-AGCACCGCG 46143 ||||||| ||| ||||| |||| ||||| | ||||||| |||| || | || Sbjct 76419 TGCCGTGTGTGAAGAAGAAGGCCGATTGGGCACTCCAGTGGATTGCCAGCCAGGAA-GCA 76361 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 | ||||| ||| | | | ||||||||| || ||||| | || || || || Sbjct 76360 AATTTCGGCGAAAGGGTCATTGCCTTTGCGGCAGTTGAGGGGATTTTCTTCAGCGGTAGC 76301 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 || ||| | ||||| | |||| | |||||||||||||| || ||||| ||||| Sbjct 76300 TTCGCCTCAATCTTCTGGCTCAAGTCACGCGGCATCATGCCCGGACTCACGTTCAGCAAT 76241 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 ||||| || || ||||| |||||||| || |||||||||||||| Sbjct 76240 GAGCTCATTTCACGCGATGAGGGCCTCCACTGTGACTTTGCGTGTCT 76194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471944759354880