Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq24 118 9e-22 seq1176 96.9 3e-15 >seq24 Length=280856 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||| || ||||| ||||||| | || || ||| | || Sbjct 39348 AATGCAGATCTTTGTGAAGACTTTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCATC 39407 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || ||| ||||| ||| ||| ||||| || || ||||| || ||||| Sbjct 39408 TGATACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 39467 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| ||||| ||| | || |||| || || | ||||||||| Sbjct 39468 GCAGCGTTTGATCTTTGCTGGCAAGCAACTCGAGGATGGGCGTACGCTCTCCGATTACAA 39527 Query 25178 TATTCAAAAAGAATCCAC 25195 |||||| || ||||| || Sbjct 39528 TATTCAGAAGGAATCTAC 39545 >seq1176 Length=25388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || | ||||| |||| || ||| |||| Sbjct 17492 ATGCAGATCTTTGTGAAAACACTCACAGGGAAGACGATCACCCTCGAGGTTGAGCCGTCA 17433 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || |||||| | || |||| |||| ||| ||||||||||| ||||| || || Sbjct 17432 GATACCATCGAG--AATGTAAAAGCTAAAATTCAG-GACAAAGAAGGCATTCCGCCAGAT 17376 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||| || || | ||||||| || || || ||| ||| Sbjct 17375 CAGCAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAAGATGGGCGTACATTGTCCGACTAC 17316 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || | ||||| Sbjct 17315 AACATCCAGAAGGAATCAACACTCCACCTTGTGCT 17281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433267097374580