Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2439 217 1e-51 seq24 123 2e-23 >seq2439 Length=24097 Score = 217 bits (240), Expect = 1e-51 Identities = 1043/1634 (64%), Gaps = 42/1634 (3%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || ||||| ||||||| || || | || || || || ||||||||||| ||||| || Sbjct 3993 TTATCCACAGTAAATTGGATGGCATTGGCAGCTGGTTTAGTGCGCAAATAATACATCCCC 3934 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | || ||||||| | || | ||||| | || | | ||| | ||| Sbjct 3933 GTTTTGAGGCCCATTTTCCAGGCATGGAAATGAATTGAAGTGAGTTTCCCATAGTTAGGT 3874 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | || |||| || |||||||||||||||||||| |||| || || || || ||| Sbjct 3873 TCTGCCACGTAAATGTTGAATGATTGACTTTGATCAATGAAGGCCCCACGGTCAGCTGCC 3814 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || |||||| ||||||| || ||||||||||| ||||| || | ||| | | | Sbjct 3813 ATTTCAATCATTGTTTTCACCTTGATTTCCCACACGGTTTTATACAACTCACGAATATCC 3754 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 | || ||||| ||| |||||||| ||| ||||| ||||| | |||||| ||| Sbjct 3753 TCAGGAATTTCCAGAATATTCTGCACAGAGCCATTGTTGGCAATTAATTTGTTCTTCATT 3694 Query 129079 TGTTCGTTGTACAAATTC--AGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTT 129136 | || | | |||| | |||| | ||| | || | |||| | |||| Sbjct 3693 TCATCAT--TCCAAAGGCGTAGTTCAGAGAGATCCTTTAACAGATGGCTGTTAACCACTT 3636 Query 129137 GAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATT 129196 | || || || | | ||| || || ||| || ||| ||| | || || || |||| Sbjct 3635 GGAATTCCCCAGAAAGAACACGACGGGTGTACATATTGGATGTGTAGGGTTCGAAGGATT 3576 Query 129197 CATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGT 129256 |||| ||||| | ||||||||||| | || || ||||| |||||| || || | Sbjct 3575 CATTATTGCCAAGAATTTGAGCCGTAGAAGCCGTTGGCATTGGAGCCACAAGCAGGGAAT 3516 Query 129257 TTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GT 129314 |||| | ||| ||||| ||| | | || |||| ||| | ||| | ||| || Sbjct 3515 TTCGAACACCATGCTGAGCAATCTTTGCCTTCAATTCATCCCAATTCCAAA--GATCCGT 3458 Query 129315 GGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTA 129374 || | |||||||| ||||| |||| || ||| || | ||||| | ||| Sbjct 3457 TGGCTTTCTATTCCACATATCGTACTGCAGAATTCCCTTGCTTACTGGACTTCCATTGTA 3398 Query 129375 GGAATCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAATGCGCCAAAA 129432 | || | ||| ||||| | || | || ||||| || || | || ||| | Sbjct 3397 CGTCTCATATGGTCCG--AGCTTCTCAGCGAGCTCACAACTAGCCTCAAGAGCTCCATAG 3340 Query 129433 TAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATA 129492 ||||| ||||| |||| ||| | ||||| | | ||| || || || | Sbjct 3339 TAAATGGTTTCAAAGATTTGTTGGTTGAGTTTCTTGGCTTCTTTGCTATCATATGGGAGG 3280 Query 129493 CGCA--ACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTT 129550 |||| | | | || | || || | |||||||| || | || || |||| ||| Sbjct 3279 CGCATGAGAATGTAA--GCATCCGCTAGACCTTGAACTCCAATTCCAATCGGTCTGTGTC 3222 Query 129551 TTCTATTGGA--TTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTT 129608 ||||||| |||| || || ||| ||||||||||||||||||| |||||| Sbjct 3221 GCATATTGGAGCGCTTTGCTTCGGGTAC--GGGGTAGTAGTTGATGTCTATAACTTTGTT 3164 Query 129609 TAAATT-CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTA 129667 | ||| | || ||||| ||||| ||| | |||| | | ||||||| || || || Sbjct 3163 GAGATTGCGTG-TGACAATCTTCGTGACGGACTTTAGCTTCTCAAAATCATA--CGTCT- 3108 Query 129668 CATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGT 129727 |||| ||||| ||| | ||| || || |||||||| || ||| | || | Sbjct 3107 TATCGGGCAGTACAAACATATTAAGTGCAATTGATGCTAAATTGCACACAGCAATCTCAT 3048 Query 129728 TTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAAT 129787 ||| || || || || |||| ||| | || ||| ||| || || | || Sbjct 3047 CCTTGGACGAATATTCAACGATCTCGGTGCAGAGGTTGCTACAGCGAATTGTACCAATAT 2988 Query 129788 GCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTT 129847 || |||||||| || ||| || || || ||||||| ||| |||||||| ||||||| Sbjct 2987 TCTGCTGATTACTCTTACGGTTACATGCGTCCTTGTACAGCATATACGGCGTTCCCGTTT 2928 Query 129848 CGACTTGCGTTTCGACAATGGTCCTGAACAA--GTCTCGAGCCTTGATCTGTCTTACAAA 129905 | ||||| ||| | |||| | | ||| |||||||| || | ||||| || Sbjct 2927 CTACTTGACTTTGAATGATGG--CAAACCAAAGATCTCGAGC--TG--GTACCTTACGAA 2874 Query 129906 TTTGC-CACATT---TCTCGTATGCCACATACAGTTGTTCAAATTC-TGAGCCGTGTACG 129960 | | | || || ||||| |||| || | |||||| | | || | | Sbjct 2873 TGTACTGACCTTCTGCTTCGTACTTTGTGTACAATTTATTAAATTCTTCACCCCAGCAAT 2814 Query 129961 GTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACT 130020 | | | | ||| | | || ||||| | |||||| |||||| | ||| Sbjct 2813 CAAACAATCCAGGGC-ACTTGTTAGGGCACATGAGACTCCATTCACCATCCTCGGAGACA 2755 Query 130021 CGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCC 130080 || | |||||| ||||| || | ||| || || || || | |||||| ||| | | Sbjct 2754 CGCTGCATAAATAAATCAGGAATCCAGAGCGCATAGAAGAGATCTCGTGCTCGTGCCTTT 2695 Query 130081 TCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCA 130140 || ||| | || ||| || || ||||| || | || || | ||||| |||||| Sbjct 2694 TCCTTACCGGTATTCTTTTTAAGGTCTAGGAATTCAAAGATATCCCCATGCCAGGGTTCA 2635 Query 130141 ACATAAATTGCCATTGCGCCCTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACGGCA 130197 | || ||||| | || || || || || ||||| ||||||| || | | | Sbjct 2634 AGGTATATTGCAAAGGCACCTGGGCGCTTATTCCCACCTTGATCAACGTAGCAGGCAGTA 2575 Query 130198 TTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATG 130257 |||||||||| || | ||| | | | ||| || | ||||| || || | ||||| Sbjct 2574 GTGTTGTAGACGCGAAGCATCGGTACGAGTCCATTCGATGTGCCATTGGTTCCAGCAATG 2515 Query 130258 AAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGAT 130317 ||| |||||||| |||| | ||| | | ||| || || || || | ||||| Sbjct 2514 TGACTACCACGAGCTCGAATGCAGTGAGTATTAACACCAATCCCTCCTGCAGACTTTGAG 2455 Query 130318 ATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTT 130377 || | ||||| | || || || || || ||| | |||||||| || ||| Sbjct 2454 ATTAGAGCGCATTGTTTCAGTGTATCGTAGATACCATCAATACTGTCATCAGCCATGGAC 2395 Query 130378 AGGAGGAAACACGA 130391 ||||||||||| || Sbjct 2394 AGGAGGAAACAAGA 2381 >seq24 Length=280856 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || |||||||| ||||| || |||||||||| || || | | Sbjct 39349 ATGCAGATCTTTGTGAAGACTTTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCATCT 39408 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| || || ||||||||||| ||||| || || || Sbjct 39409 GATACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 39468 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| || | |||||| || || ||||||||||||| Sbjct 39469 CAGCGTTTGATCTTTGCTGGCAAGCAACTCGAGGATGGGCGTACGCTCTCCGATTACAAT 39528 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 39529 ATTCAGAAGGAATCTACC 39546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419669008803580