Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq825 165 2e-35 seq1176 152 9e-32 seq24 118 2e-21 seq410 93.3 8e-14 >seq825 Length=38805 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||| ||||| || || |||||||| || |||||||| || |||||| Sbjct 11870 CCACCACGAAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 11929 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| |||| |||||||||||| || ||||| | || || || || || Sbjct 11930 AGGGTGCGCCCATCCTCTAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAGGG 11989 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || || ||||| || |||||||| || || || || | | ||| || Sbjct 11990 ATTCCCTCTTTATCCTGAATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGACC 12049 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || |||||||| || || ||||| ||||||||| || Sbjct 12050 TCAAGGGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAAATCTGCATTTTG 12100 >seq1176 Length=25388 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || || || || |||||||| || ||||| Sbjct 17266 CCACCACGAAGACGGAGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 17325 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||||||| | ||||||||||||||| ||||| | || || || || ||| Sbjct 17326 AATGTACGCCCATCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGCGGA 17385 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| ||||| || || || || ||||||||| |||| | || || Sbjct 17386 ATGCCTTCTTTGTCCTGAATTTTAGCTTTTACATTCTCGATGGTATCTGACGGCTCAACC 17445 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || ||||| || || || || |||||||| Sbjct 17446 TCGAGGGTGATCGTCTTCCCTGTGAGTGTTTTCACAAAGATCTGCAT 17492 >seq24 Length=280856 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || || || || || || || ||||||||||| || | |||||| || | ||||| || Sbjct 39545 GTAGATTCCTTCTGAATATTGTAATCGGAGAGCGTACGCCCATCCTCGAGTTGCTTGCCA 39486 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | | || ||||| || |||||||| |||||||| || ||||||||||| Sbjct 39485 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTC 39426 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || ||| || || || | || || || || | |||||||| || ||||| | ||| Sbjct 39425 ACATTCTCAATCGTATCAGATGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAAAGTC 39366 Query 68445 TTGACGAATATCTGCATT 68462 || || || ||||||||| Sbjct 39365 TTCACAAAGATCTGCATT 39348 >seq410 Length=118525 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 268367 GTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATG 268426 || ||||| || || || || |||| ||||| | ||| || || ||||||||||| Sbjct 57229 GTAATTTTGCGCGTGACAAAATTCTCCCCACGACGTGGGGATTCATGATTGAAGAGGATC 57170 Query 268427 CCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAAC 268486 || ||||| |||||||| || || ||||||||||||||||| || |||| | | || Sbjct 57169 CCATTGCAGGCGAACATCCCGTAGGCCTCACGGTAGTTCACCACAATCCAAAAGCCGTAC 57110 Query 268487 ATCTTTGCA 268495 ||||||||| Sbjct 57109 ATCTTTGCA 57101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921489548131040