Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq79 226 5e-54 seq2439 102 2e-16 >seq79 Length=216850 Score = 226 bits (250), Expect = 5e-54 Identities = 420/612 (69%), Gaps = 11/612 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||| || || || || || || || |||||||| || | | |||| Sbjct 76627 CTGGCATTCTTTGCGGCATCCGATGGGATTGTAAATGAGAATCTCGTGGAGCGCTTCAGT 76568 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | |||||||| | ||||| || | |||||| ||||||||||| ||||| ||||| Sbjct 76567 CAGGAGGTGCAAATCACAGAGGCACGATTCTTCTATGGCTTCCAGATTGCCATGGAGAAT 76508 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 || || || ||||| | |||||| | |||||||| | |||||| ||| Sbjct 76507 GTACATAGCGAAATGTAC---AGTTTGCTCATTGATACGTACATACGGGATCCGCAGGAG 76451 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 || || ||||| ||||| |||||| |||| || | ||||||||||| || ||| Sbjct 76450 AAGGACTTCCTCTTCAATGCCATCGAGACGCTGCCGTGTGTGAAGAAGAAGGCCGATTGG 76391 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || ||| | ||||| | || | || |||| |||||||| ||| | | |||||| | Sbjct 76390 GCACTCCAGTGGATTGCCAGCCAGGAAGCAAATTTCGGCGAAAGGGTCATTGCCTTTGCG 76331 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAA 42778 || || ||||| || |||||| || ||||||||| ||||||||||||||| || Sbjct 76330 GCAGTTGAGGGGATTTTCTTCAGCGGTAGCTTCGCCTCAATCTTCTGGCTCAAGTCACGC 76271 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 || || |||||||||||||| ||| || || ||||| | || ||||| || || Sbjct 76270 GGCATC-ATGCCCGGACTCACGTTCAGCAATGAGCTCATTTCACGCGATGAGGGCCTCCA 76212 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898 | |||||||| || || ||||| | |||||| ||| |||||||| |||||||| Sbjct 76211 CTGTGACTTTGCGTGTCTAATGTTC---AAGCACCTCGTGCAGAAGCCCTCAAAGGAGCG 76155 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 || | ||||| || || ||| || ||| |||| |||||||| | | || Sbjct 76154 CATCATCGAAATCATTCGCGAAGCTGTGACCATTGAGCAGGAATTCCTCACAGATGCCCT 76095 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 || || | || | |||||||| | | ||||||| ||||||| | | ||| || Sbjct 76094 TCCTGTTGACATGCTGGGCATGAATTGCCAACTCATGTCGCAGTACATTGAATTCGTGGC 76035 Query 43019 CGACCATCTCCT 43030 || | ||| || Sbjct 76034 AGATCGTCTTCT 76023 >seq2439 Length=24097 Score = 102 bits (112), Expect = 2e-16 Identities = 205/300 (68%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359 |||||| || ||||||| | |||||||| || || || || | ||| ||| || || Sbjct 3445 CCACATATCGTACTGCAGAATTCCCTTGCTTACTGGACTTCCATTGTACGTCTCATATGG 3386 Query 244360 ACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAA 244419 ||| || || |||| ||| || | || || || | ||||| ||||| || || Sbjct 3385 TCCGAGCTTCTCAGCGAGCTCACAACTAGCCTCAAGAGCTCCATAGTAAATGGTTTCAAA 3326 Query 244420 GATCATCTTGTTCA-TGTCGCGGG--CCTTGCCGCAGGTGA-AGGGGATGCCCATCATCA 244475 ||| | ||| | | || || | |||| | | | |||| || ||| | | Sbjct 3325 GATTTGTTGGTTGAGTTTCTTGGCTTCTTTGCTA----TCATATGGGAGGCGCATGAGAA 3270 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC 244535 || | | || || || || || || || || || || |||||||||||| | ||||||| Sbjct 3269 TGTAAGCATCCGCTAGACCTTGAACTCCAATTCCAATCGGTCTGTGTCGCATATTGGAGC 3210 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 || | |||||||| |||||||| ||||| ||| || || |||||||| ||||| |||| Sbjct 3209 GCTTTGCTTCGGGTACGGGGTAGTAGTTGATGTCTATAACTTTGTTGAGATTGCGTGTGA 3150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944203073504320