Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq825 116 4e-21 seq2439 114 1e-20 seq24 95.1 1e-14 seq1176 89.7 5e-13 >seq825 Length=38805 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||||||| | || ||||| || || || ||||| ||| Sbjct 11870 CCACCACGAAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 11929 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| |||||||| || || || |||| | ||||||||||| ||||| Sbjct 11930 AGGGTGCGCCCATCCTCTAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAGGG 11989 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| || ||| |||||| ||||| | ||| | || |||| ||||| Sbjct 11990 ATTCCCTCTTTATCCTGAATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGACC 12049 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || |||||||| || ||||||||||| Sbjct 12050 TCAAGGGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAAATCTGCAT 12096 >seq2439 Length=24097 Score = 114 bits (126), Expect = 1e-20 Identities = 584/924 (63%), Gaps = 14/924 (2%) Strand=Plus/Minus Query 145858 GATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGAT 145917 ||||| || ||||||||||| | | ||||| || ||||| || ||||| || Sbjct 3852 GATTGACTTTGATCAATGAAGGCCCCACGGTCAGCTGCCATTTCAATCATTGTTTTCACC 3793 Query 145918 TTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTC 145977 || |||||||| |||||||| | | || | | || || ||||| ||| ||| Sbjct 3792 TTGATTTCCCACACGGTTTTATACAACTCACGAATATCCTCAGGAATTTCCAGAATATTC 3733 Query 145978 TGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAG 146037 |||||||| ||||| | ||| | || |||||| || ||| | | ||| | | Sbjct 3732 TGCACAGAGCCATTGTTGGCAATTAATTTGTTCTTCATTTCATCATTCCAAAGGCGTAGT 3673 Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097 || ||| |||| | |||| ||| ||||| || || || || | ||||| || Sbjct 3672 TCAGAGAGATCCTTTAACAGATGGCTGTTAACCACTTGGAATTCCCCAGAAAGAACACGA 3613 Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157 | |||| ||| ||| | || ||||| || || || || || || || || ||| Sbjct 3612 CGGGTGTACATATTGGATGTGTAGGGTTCGAAGGATTCATTATTGCCAAGAATTTGAGCC 3553 Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AAT 146216 || | ||| || ||||| ||||| |||| || |||| || || || || | ||| Sbjct 3552 GTAGAAGCCGTTGGCATTGGAGCCACAAGCAGGGAATTTCGAACACCATG-CTGAGCAAT 3494 Query 146217 CTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTC 146276 |||| || | || |||||||| || ||||||| || | |||| | | || Sbjct 3493 CTTTGCCTTCAATTCATCCCAATTCC---AAAGATCCGTTGGCTTTCTATTCCACATATC 3437 Query 146277 GTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGAT 146336 ||| |||| | | || | | || || | ||||| ||||| || ||| | Sbjct 3436 GTACTGCAGAATTCCCTTGCTTACTGGACTTCCATTGTACGTCTCATATGGTCCGAGCTT 3377 Query 146337 CTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA 146396 || || || || || ||||| || ||||| | |||| ||||| || ||| | Sbjct 3376 CTCAGCGAGCTCACAACTAGCCTCAAGAGCTCCATAGTAAATGGTTTCAAAGATTTGTTG 3317 Query 146397 GTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCGGC 146456 ||||| || |||| || | ||| || || |||| | || | | || || || Sbjct 3316 GTTGAGTTTCTTGGCTTCTTTGCTATCATATGGGAGGCGCATGAGAATGTAAGCATCCGC 3257 Query 146457 GAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGC 146516 ||||| || | || | |||| || | |||| | | || | | || | | Sbjct 3256 TAGACCTTGAACTCCAATTCCAATCGGTCTGTGTCGCATATTGGAGCGCTTTGCTTCGGG 3197 Query 146517 AGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAA 146576 ||| |||| |||| |||| || | ||||||||||| || |||||| ||||| | Sbjct 3196 TACGGGGTAGTAGTTGATGTCTATAACTTTGTTGAGATTGCGTGTGACAATCTTCGTGAC 3137 Query 146577 ACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGC 146636 || ||| || | ||| | || ||| | || || || | || | || Sbjct 3136 GGACTTTAGCTTCTCAAAATCATACGTCTTA-TCGGGCAGT--ACAAACATATTAAGTGC 3080 Query 146637 GATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGC 146696 || || || || || || || ||| |||| |||||| |||| | || ||||||| Sbjct 3079 AATTGATGCTAAATTGCACACAGCAATCTCATCCTTGGACGAATATTCAACGATCTCGGT 3020 Query 146697 GCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTTGCA 146753 |||||||||||| || || | || | ||| | || ||||| ||| ||| || Sbjct 3019 GCAGAGGTTGCTACAGCGAATTGTACCAATATTCTGCTGATTACT---CTTACGGTTACA 2963 Query 146754 GGGGTCCTTGTAGAGCATGTACGG 146777 | ||||||||| ||||| ||||| Sbjct 2962 TGCGTCCTTGTACAGCATATACGG 2939 >seq24 Length=280856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || ||||||||||||||| | ||| || ||| || || || || ||| Sbjct 39545 GTAGATTCCTTCTGAATATTGTAATCGGAGAGCGTACGCCCATCCTCGAGTTGCTTGCCA 39486 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| |||||||| || || || ||||||||||||||| ||| || ||| Sbjct 39485 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTC 39426 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | |||||| || | || | || || || || | ||| Sbjct 39425 ACATTCTCAATCGTATCAGATGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAAAGTC 39366 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 39365 TTCACAAAGATCTGCAT 39349 >seq1176 Length=25388 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | || || || || || || ||||| ||| Sbjct 17263 GCACCACCACGAAGACGGAGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCG 17322 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || || ||| |||| | ||||||||||| || Sbjct 17323 GACAATGTACGCCCATCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGC 17382 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||| || |||||| ||| ||| || || | | |||| ||| || | ||| Sbjct 17383 GGAATGCCTTCTTTGTCC-TGAATTTTAGCTTTTACATTCTCGATGGTATCTGACGGCTC 17441 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | ||| || || || || ||||| ||||| |||||||| Sbjct 17442 AACCTCGAGGGTGATCGTCTTCCCTGTGAGTGTTTTCACAAAGATCTGCAT 17492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475432256559680