Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2439 152 5e-32 seq1176 100 3e-16 >seq2439 Length=24097 Score = 152 bits (168), Expect = 5e-32 Identities = 695/1091 (64%), Gaps = 26/1091 (2%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||||| ||||| ||||||||||| ||||| ||||| ||||| || ||| | || | ||| Sbjct 2921 CAAGTAGAAACGGGAACGCCGTATATGCTGTACAAGGACGCATGTAACCGTAAGAGTAAT 2980 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA--CA 123717 ||| || | || ||||| ||||| || || ||| |||| || | ||||| | Sbjct 2981 CAGCAGAATATTGGTACAATTCGCTGTAGCAACCTCTGCACCGAGATCGTTGAATATTCG 3040 Query 123718 GCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGT-- 123775 | | | ||| | | || ||||| ||||| || || ||| | ||| | || Sbjct 3041 TCCAAG--GATGAGATTGCTGTGTGCAATTTAGCATCAATTGCACTTAATATGTTTGTAC 3098 Query 123776 ----CGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAA 123831 ||| || | || | | |||| | | ||| || | | || || | ||| | Sbjct 3099 TGCCCGATAA-GACG--TATGATTTTGAGAAGCTAAAGTCCGTCACGAAGATTGTCACAC 3155 Query 123832 AGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGC---GCGTTTGT 123888 ||| | |||||| |||| || | || | || || | ||||| ||| | Sbjct 3156 GCAATCTCAACAAAGTTATAGACATCAACTACTACCCCGTACCCGAAGCAAAGCGCT--- 3212 Query 123889 CTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAA 123948 | ||| || |||||||||| | ||| | || ||||||| | || || || | | Sbjct 3213 CCAATATGCGACACAGACCGATTGGAATTGGAGTTCAAGGTCTAGCGGATGCTTACATTC 3272 Query 123949 TGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAA 124008 | ||||| | || || || ||| | ||||| ||| || || ||||| |||| Sbjct 3273 TCATGCGCCTCCCATATGATAGCAAAGAAGCCAAGAAACTCAACCAACAAATCTTTGAAA 3332 Query 124009 CAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACG 124068 | ||||| || || ||| | ||||| || || || || || | | | ||| | || | Sbjct 3333 CCATTTACTATGGAGCTCTTGAGGCTAGTTGTGAGCTCGCTGAGAAGCTCGGACCATATG 3392 Query 124069 AAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTA 124128 | | ||| || || || | ||| || ||| |||||||||| ||||||||| | Sbjct 3393 AGACGTACAATGGAAGTCCAGTAAGCAAGGGAATTCTGCAGTACGATATGTGGAATAGAA 3452 Query 124129 CACCGACAAATTTGTGGGACTGGAGCGTTTTAAAA-CAACGCATATCGACGCACGGTTTG 124187 || || || | ||| | ||| | || || ||| | || | ||| ||| | Sbjct 3453 AGCCAACGGATCTTTGGAATTGGGATGAATTGAAGGCAAAG-ATTGCTCAGCATGGTGTT 3511 Query 124188 CGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAAC 124247 || || || ||| | ||||| ||||| ||||| | || ||||||||| | || || Sbjct 3512 CGAAATTCCCTGCTTGTGGCTCCAATGCCAACGGCTTCTACGGCTCAAATTCTTGGCAAT 3571 Query 124248 AACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 || ||||||||||| || | ||| |||| ||||| || || || | | || || Sbjct 3572 AATGAATCCTTCGAACCCTACACATCCAATATGTACACCCGTCGTGTTCTTTCTGGGGAA 3631 Query 124308 TTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAA--TTTGTACGATG 124365 || |||||| | || ||| || | | || | | || |||| | ||| Sbjct 3632 TTCCAAGTGGTTAACAGCCATCTGTTAAAGGATCTCTCTGAACTACGCCTTTGGA--ATG 3689 Query 124366 AAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTC 124425 | | ||| ||| || | ||||| | |||| |||||| || |||| Sbjct 3690 ATGAAATGAAGAACAAATTAATTGCCAACAATGGCTCTGTGCAGAATATTCTGGAAATTC 3749 Query 124426 CGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTG 124485 | || | | | |||| ||||||||||||||||| || ||| | | |||| Sbjct 3750 CTGAGGATATTCGTGAGTTGTATAAAACCGTGTGGGAAATCAAGGTGAAAACAATGATTG 3809 Query 124486 AAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAG 124545 ||||||| | ||||| || || | || |||||||||||||| || ||| | | || | Sbjct 3810 AAATGGCAGCTGACCGTGGGGCCTTCATTGATCAAAGTCAATCATTCAACATTTACGTGG 3869 Query 124546 CGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCA 124605 | ||||| | ||| | | || || || | || || |||| | || |||| Sbjct 3870 CAGAACCTAACTATGGGAAACTCACTTCAATTCATTTCCATGCCTGGAAAATGGGCCTCA 3929 Query 124606 AAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCG 124665 ||||||| |||||||| || | || ||||| || ||| ||||||| |||||||| || | Sbjct 3930 AAACGGGGATGTATTATTTGCGCACTAAACCAGCTGCCAATGCCATCCAATTTACTGTGG 3989 Query 124666 ACAAATCTAAA 124676 | |||| |||| Sbjct 3990 ATAAAT-TAAA 3999 >seq1176 Length=25388 Score = 100 bits (110), Expect = 3e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| || || || ||||||||||| ||||| || || ||| ||| | | | ||| Sbjct 17283 CACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCG--GACAATGTACGCCCATCT 17340 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 |||| || || || ||| | || | || ||||| || ||||||||||||||||| || Sbjct 17341 TCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGCGGAATGCCTTCTTTGTCC 17400 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||||||| ||| | || | ||| || || | ||| || ||||| || | ||| Sbjct 17401 TGAATTTTAGCTTTTACATTCTCGATGGTATCTGACGGCTCAACCTCGAGGGTGATCGTC 17460 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || ||||| ||||| || |||||| Sbjct 17461 TTCCCTGTGAGTGTTTTCACAAAGATCTGCATC 17493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451938043738720