Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1176 167 5e-36 seq825 147 5e-30 seq24 84.2 5e-11 >seq1176 Length=25388 Score = 167 bits (184), Expect = 5e-36 Identities = 170/219 (78%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||||||||| || || ||||| |||| ||||||||| | ||| || Sbjct 17272 CGAAGACGGAGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTA 17331 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| ||||||||||||||||||||||| || || ||| ||| Sbjct 17332 CGCCCATCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGCGGAATGCCT 17391 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| || || || |||| ||| |||| | || || || | Sbjct 17392 TCTTTGTCCTGAAT-TTTAGCTTTTACATTCTCGATGGTATCTGACGGCTCAACCTCGAG 17450 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || ||||| ||||||||||| || || Sbjct 17451 GGTGATCGTCTTCCCTGTGAGTGTTTTCACAAAGATCTG 17489 >seq825 Length=38805 Score = 147 bits (162), Expect = 5e-30 Identities = 169/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||||| || |||||||| |||| ||||||||| | | || Sbjct 11876 CGAAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 11935 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| ||||||||||||||||| |||||| ||||| Sbjct 11936 CGCCCATCCTCTAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAGGGATTCCC 11995 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||||||| || ||| || ||| | || || | | ||| || || | Sbjct 11996 TCTTTATCCTGAATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGACCTCAAGG 12055 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| ||||||||||||||||| ||||| || |||||| Sbjct 12056 GTGATGGTCTTCCCCGTGAGAGTTTTCACGAAAATCTG---CATTTT 12099 >seq24 Length=280856 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || ||||| || | ||||| || | | || | ||||| || || ||||| || Sbjct 39545 GTAGATTCCTTCTGAATATTGTAATCGGAGAGCGTACGCCCATCCTCGAGTTGCTTGCCA 39486 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | |||||||||||| || ||| || || ||||| |||||| |||| Sbjct 39485 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTC 39426 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || || | || || | || || || || | ||||| ||||||||||| | ||| Sbjct 39425 ACATTCTCAATCGTATCAGATGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAAAGTC 39366 Query 199613 TTCACAAAAATTTG 199626 |||||||| || || Sbjct 39365 TTCACAAAGATCTG 39352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178747409912644