Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1176 95.1 8e-15 seq825 95.1 8e-15 seq24 87.8 1e-12 >seq1176 Length=25388 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | | || |||| |||||||| || ||||| || Sbjct 17301 TTCCTTCTGGATGTTGTAGTCGGACAATGTACGCCCATCTTCCAGCTGCTTCCCGGCGAA 17360 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-- 34907 || || || ||||| ||| |||| | || || ||||| ||| || ||| || Sbjct 17361 GATGAGACGCTGCTGATCTGGCGGAATGCCTTCTTTGTCCTGAATTTTAGCTTTTACATT 17420 Query 34908 ---GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 |||| |||| | || | |||||| |||| ||| || || || || ||||| || Sbjct 17421 CTCGATGGTATC---TGACGG--CTCAACCTCGAGGGTGATCGTCTTCCCTGTGAGTGTT 17475 Query 34965 TTCACAAAGATCTGCAT 34981 ||||||||||||||||| Sbjct 17476 TTCACAAAGATCTGCAT 17492 >seq825 Length=38805 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| ||||| || ||| | || |||| || Sbjct 11888 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCT 11947 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||| || | || | ||||| || || | Sbjct 11948 AGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAGGGATTCCCTCTTTATCCTGA 12007 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||| ||||| | | || | || || || || || | ||| ||||| || Sbjct 12008 ATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGACCTCAAGGGTGATGGTCTTC 12067 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||||||| ||||| || |||||||| || Sbjct 12068 CCCGTGAGAGTTTTCACGAAAATCTGCATTTT 12099 >seq24 Length=280856 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || || || || | || |||| || || || || || ||||| Sbjct 39540 TTCCTTCTGAATATTGTAATCGGAGAGCGTACGCCCATCCTCGAGTTGCTTGCCAGCAAA 39481 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | ||||||||||| ||||| || || | Sbjct 39480 GATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCAC--A 39423 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| ||| | ||| || || | || ||||| || ||||| | ||||||| Sbjct 39422 TTCTCAATCGTATCAGATGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAAAGTCTTC 39363 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 39362 ACAAAGATCTGCAT 39349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324587973964896