Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2439 372 3e-98 seq79 172 6e-38 >seq2439 Length=24097 Score = 372 bits (412), Expect = 3e-98 Identities = 1205/1865 (65%), Gaps = 64/1865 (3%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| ||||||||||| | || | ||| |||| ||| || || ||||||||||| || Sbjct 3994 TTTATCCACAGTAAATTGGATGGCATTGGCAGCTGGTTTAGTGCGCAAATAATACATCCC 3935 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || | || | |||| ||| |||||| || ||| | ||| ||| |||| Sbjct 3934 CGTTTTGAGGCCCATTTTCCAGGCATGGAAATGAATTGAAGTGAGTTTCCCATAGTTAGG 3875 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||||| | | ||| || | |||||||| |||||||| || || || | |||||||| Sbjct 3874 TTCTGCCACGTAAATGTTGAATGATTGACTTTGATCAATGAAGGCCCCACGGTCAGCTGC 3815 Query 47153 CATATCTAAAATAA----CCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAA 47208 ||| || | || | | ||| || ||||| || |||||||| | | || Sbjct 3814 CATTTCAATCATTGTTTTCACCTTG----ATTTCCCACACGGTTTTATACAACTCACGAA 3759 Query 47209 TGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgtttt 47265 | || || || | | | |||| || | ||| || ||| | || | |||||| | Sbjct 3758 TATCCTCAGGAATTTCCAGAATATTCTGCACAGAGCCATTGTTGGCAATTAATTTGTTCT 3699 Query 47266 ttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAA 47325 | | ||||| |||||| | |||||| | ||||| ||||| ||||| | Sbjct 3698 TCATTTCATCATTCCAAAGGCGTAGTTCAGAGAGATCCTTTAACAGATGGCTGTTAACCA 3639 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 ||| ||||| ||||| || || | |||| | || ||||| ||| || ||||| | | Sbjct 3638 CTTGGAATTCCCCAGAAAGAACACGACGGGTGTACATATTGGATGTGTAGGGTTCGAAGG 3579 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 |||||||||| |||| ||||||||| || || || || ||||| | || || | | | Sbjct 3578 ATTCATTATTGCCAAGAATTTGAGCCGTAGAAGCCGTTGGCATTGGAGCCACAAGCAGGG 3519 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 ||||| || |||| | |||| | ||||| ||||||||| | Sbjct 3518 AATTTCGAACACCATGCTGAGCAATCTTTGCCTTCAATTCATCCCAATTCCAAAGATCCG 3459 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 ||| |||||| | ||| || || |||||||| || |||| ||| ||||| | Sbjct 3458 TTGGCTTTCTATTCCACATATCGTACTGCAGAATTCCCTTGCTTACTGGACTTCCATTGT 3399 Query 47566 ATGTTTTATAAGGACCGTATAGTTT---AGCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 | || | ||| || ||| || || |||||| |||||||| || || | || | || Sbjct 3398 ACGTCTCATATGGTCCG---AGCTTCTCAGCGAGCTCACAACTAGCCTCAAGAGCTCCAT 3342 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGAT-TCAAAAGGA 47681 | || || |||||||| |||| | ||| || ||| | |||||| || | ||| | || Sbjct 3341 AGTAAATGGTTTCAAAGATTTGTTGGTTGAGTTTCTTGGCTTCTT-TGCTATCATATGGG 3283 Query 47682 TANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGA 47741 | | ||| || | |||||||| ||||| ||||| ||||| || Sbjct 3282 AGGCGCATGAGAATGTAAGCATCCGCTAGACCTTGAACTCCAATTCCAATCGGTCTGTGT 3223 Query 47742 GTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTT 47801 |||| || || ||||| |||| || || | ||| || ||||||| ||| || Sbjct 3222 CGCATATTGGAGCGCTTTGCTTCGGGTACGGGGTAGTAGTTGATGTCTATAACTTTGTTG 3163 Query 47802 AGANNNNNNNNNNNNNNNNNNACAAT-TTCTC--------TTAATTTATTAAAATCAAAC 47852 ||| ||||| ||| ||| || | ||||||| || Sbjct 3162 AGATTGCGTGTG---------ACAATCTTCGTGACGGACTTTAGCTTCTCAAAATCATAC 3112 Query 47853 TTGTTATTT---ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACC 47909 | |||| | |||||| |||||||||| || ||||||| ||| || ||||| | | Sbjct 3111 GTCTTATCGGGCAGTACAAACATATTAAGTGCAATTGATGCTAAATTGCACACAGCAATC 3052 Query 47910 TCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTAC 47967 |||| ||||| | ||||| | || || | || || || | ||| || |||| Sbjct 3051 TCATCCTTGGACGA--ATATTCAACGATCTCGGTGCAGAGGTTGCTACAGCGAATTGTAC 2994 Query 47968 CCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTC 48027 | | ||| || |||||| | |||||||||||||||||| |||||| | || |||| Sbjct 2993 CAATATTCTGCTGATTACTCTTACGGTTACATGCGTCCTTGTACAGCATATACGGCGTTC 2934 Query 48028 CAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA--TAACAGC 48085 | ||||||| ||| || |||||| | ||||| | | ||| || | || Sbjct 2933 CCGTTTCTACTTGACTTTGAATGATGGCAAACCAAAGATCTCGAGCTGGTACCTTACGAA 2874 Query 48086 TCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACAC 48145 | || | | || |||||| || || || || || | |||||| || || | Sbjct 2873 TGTAC--TGACCTTCTGCTTCGTACTTTGTGTACAATTTATTAAATTCTTCACCCCAGCA 2816 Query 48146 ATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTAC 48205 || | || ||||| || | ||||| ||||| | ||| || |||| | || Sbjct 2815 ATCAAACAATCCAGGGCACTTGTTAGGGCACATGAGACTCCATTCACCATCCTCGGAGAC 2756 Query 48206 TCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTT 48264 | |||||||| ||| || ||||| || || ||| || | ||| | | || | | Sbjct 2755 ACGCTGCATAAATAAATCAGGAATCCAGAGCGC-ATAGAAGAGATCTCGTGCTCGTGCCT 2697 Query 48265 CTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTT 48324 ||| || || ||||| ||||||| || || || || | ||||| ||||||| |||| Sbjct 2696 TTTCCTTACCGGTATTCTTTTTAAGGTCTAGGAATTCAAAGATATCCCCATGCCAGGGTT 2637 Query 48325 CTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAG 48384 | | |||||||| | ||||||| || ||||| || |||||||| | || | ||||| Sbjct 2636 CAAGGTATATTGCAAAGGCACCTGGGCGCTTATTCCCACCTTGATCAACGTAGCAGGCAG 2577 Query 48385 TATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAA 48444 || |||| || || | | ||| || || | ||||| ||| | ||||||||||| | || Sbjct 2576 TAGTGTTGTAGACGCGAAGCATCGGTACGAGTCCATTCGATGTGCCATTGGTTCCAGCAA 2517 Query 48445 TATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTT 48502 | | ||| |||| ||||| || | | ||| || ||| || || ||||| || Sbjct 2516 TGTGACTACCACGAGCTCGAATGCAGTGAGTATT--AACACCAATCCCTCCTGCAGACTT 2459 Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 || |||||||| || |||| || ||||| || || || || ||||| ||||| ||| Sbjct 2458 TGAGATTAGAGCGCATTGTTTCAGTGTATCGTAGATACCATCAATACTGTCATCAGCCAT 2399 Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATG-AC--AAGTTCCTGAATTAAATAATGT 48619 | || ||||| |||| | || || | || ||| | | ||| | ||| Sbjct 2398 GGACAGGAGGAAACA---AGACGATAGCTGAGGCACTGGAGTGGCAGCTGCAAAGAGTGT 2342 Query 48620 TGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATC 48679 ||| ||||| || | || | | ||||| | || || || ||||| | | | | Sbjct 2341 TGGTGATGCGTGCGTGAAATACCGTTGTGATAGAAGGTTGTACGTCTCAATGGCTGCAGC 2282 Query 48680 TATATCCCATT--GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 || | |||| || || || | |||||| ||||| | ||||| || || |||||| Sbjct 2281 AATGT--CATTCCCGTGAATTCCCACAGATACTCGCATCAGCATATGCTGGGGCCTTTCA 2224 Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797 | ||||| || |||| | ||||||| | || | ||| || || ||||||||| Sbjct 2223 GCGATTTTCCCGCCGATCTTCATTAAATATGATCTCTCGAGTGTCTTGAAGCCAAAATAG 2164 Query 48798 TTGTA 48802 |||| Sbjct 2163 CTGTA 2159 >seq79 Length=216850 Score = 172 bits (190), Expect = 6e-38 Identities = 406/611 (66%), Gaps = 14/611 (2%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 || || || ||||| | ||| ||||| ||||| || || ||||| || | || | Sbjct 76179 AGGTGCTTGAACATTAGACACGCAAAGTCACAGTGGAGGCCCTCATCGCGTGAAATGAGC 76238 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| || || | || ||||| | || | | || | |||||| || || || Sbjct 76239 TCATTGCTGAACGTGAGTCCGGGCATGATGCCGCGTGACTTGAGCCAGAAGATTGAGGCG 76298 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || ||||| || || || ||||| ||||| |||| | ||||| || || Sbjct 76299 AAGCTACCGCTGAAGAAAATCCCCTCAACTGCCGCAAAGGCAATGACCCTTTCGCCGAAA 76358 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | || || | | |||||| | ||||||||||| |||||||| || ||||| ||| Sbjct 76359 TTTGCTTCCTGGCTGGCAATCCACTGGAGTGCCCAATCGGCCTTCTTCTTCACACACGGC 76418 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 | ||||| || | ||| || || | ||| | | ||| | |||| | | Sbjct 76419 AGCGTCTCGATGGCATTGAAGAGGAAGTCCTTCTCCTGCGGATCC----CGTATGTACGT 76474 Query 19243 ATCAAT----AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298 |||||| |||||||||||||| ||| | ||| || || || ||||| || || || Sbjct 76475 ATCAATGAGCAAACTGTACATTTCGCTATGTACATTCTCCATGGCAATCTGGAAGCCATA 76534 Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358 || ||| ||| ||||| || || || || || || | || || | ||| ||||| Sbjct 76535 GAAGAATCGTGCCTCTGTGATTTGCACCTCCTGACTGAAGCGCTCCACGAGATTCTCATT 76594 Query 19359 AACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC--- 19415 || || ||||| || ||||| ||||| | || || |||| || | |||| Sbjct 76595 TACAATCCCATCGGATGCCGCAAAGAATGCCAGGACGTGGCTAATGAATTTCCTTTCGCA 76654 Query 19416 ATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGT 19475 ||| | || | |||||| | || ||||| |||| |||||||| |||||||| Sbjct 76655 ATCCT---TCAAAGCATTCCAGTGATCCATATCCCGGGATAGGTCTACTTCCTCAACTGT 76711 Query 19476 CCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAA 19535 |||||| || ||||| || ||||| ||||| | ||| | ||| | ||||| || || || Sbjct 76712 CCAAAATGAGGCCTCGGCCTTTTTGTACATCTCCCACACATCGTGGTATTGAATGGGGAA 76771 Query 19536 TATAACAAATC 19546 | |||||||| Sbjct 76772 GACAACAAATC 76782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 19431 ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490 |||||| | || ||||| |||| |||||||| |||||||||||||| || ||||| Sbjct 78676 ATTCCAGTGATCCATATCCCGGGATAGGTCTACTTCCTCAACTGTCCAAAATGAGGCCTC 78735 Query 19491 TGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATC 19546 || ||||| ||||| | ||| | ||| | ||||| || || || | |||||||| Sbjct 78736 GGCCTTTTTGTACATCTCCCACACATCGTGGTATTGAATGGGGAAGACAACAAATC 78791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562027772016480