Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq825 96.9 7e-15 seq24 91.5 3e-13 >seq825 Length=38805 Score = 96.9 bits (106), Expect = 7e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 || |||||||| | |||||| | || ||||| | || | ||| || ||| || || Sbjct 11864 ATGATACCACCACGAAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAG 11923 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | || || |||| || | || || || |||||||| | | ||| ||||| Sbjct 11924 TCGGAGAGGGTGCGCCCATCCTCTAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCC 11983 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || ||||| |||||||| || ||||| || ||||| || | ||| || | | Sbjct 11984 GGAGGGATTCCCTCTTTATCCTGAATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGT 12043 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 12044 TCGACCTCAAGGGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAAATCTGCATTTT 12099 >seq24 Length=280856 Score = 91.5 bits (100), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || | ||| | |||| || || ||||| ||||| Sbjct 39576 ATGCCACCACGAAGACGGAGAACGAGATG--AGGTAGATTCCTTCTGAATATTGTAATCG 39519 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||| || ||||||||||| || | ||| || || || Sbjct 39518 GAGAGCGTACGCCCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGG 39459 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| || | ||| || | || Sbjct 39458 GGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCG 39399 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || || ||||| ||||| ||||| ||||| || || | ||| ||||||||| || Sbjct 39398 ACCTCAAGAGTGATGGTCTTACCCGTTAAAGTCTTCACAAAGATCTGCATTCTA 39345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984334539388200