Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq24 141 2e-28 seq825 122 2e-22 seq1176 114 3e-20 >seq24 Length=280856 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 |||||||| ||||| ||||| ||||| || || | | || || || ||||| || ||| Sbjct 39545 GTAGATTCCTTCTGAATATTGTAATCGGAGAGCGTACGCCCATCCTCGAGTTGCTTGCCA 39486 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | | || || ||||| || || || ||||| || || |||||||| || Sbjct 39485 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTC 39426 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||| |||||||||||| || || || || | ||| || ||||| || || || ||| Sbjct 39425 ACATTCTCAATCGTATCAGATGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAAAGTC 39366 Query 82794 TTTACAAATATCTGCATT 82811 || ||||| ||||||||| Sbjct 39365 TTCACAAAGATCTGCATT 39348 >seq825 Length=38805 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || || || || || || || ||||| || || || || | Sbjct 11868 TACCACCACGAAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 11927 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || ||||| || || || |||||||| || | || ||||| |||| Sbjct 11928 AGAGGGTGCGCCCATCCTCTAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAG 11987 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || ||||| ||||| || || || ||||||||||| ||||| ||||| | Sbjct 11988 GGATTCCCTCTTTATCCTGAATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGA 12047 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || ||||| || || | || || || || ||||||||| Sbjct 12048 CCTCAAGGGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAAATCTGCATT 12097 >seq1176 Length=25388 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || ||||| ||||| || || || || || | | | || Sbjct 17277 ACGGAGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGCCC 17336 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || || ||||| || | || |||||||| || || ||||| || Sbjct 17337 ATCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGCGGAATGCCTTCTTT 17396 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || ||||| || ||||||||||| || || ||||| || || || || | || || Sbjct 17397 GTCCTGAATTTTAGCTTTTACATTCTCGATGGTATCTGACGGCTCAACCTCGAGGGTGAT 17456 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||||| | || || ||||| |||||||| Sbjct 17457 CGTCTTCCCTGTGAGTGTTTTCACAAAGATCTGCAT 17492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981682131349348