Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2439 159 3e-34 seq825 118 1e-21 seq79 113 4e-20 seq24 109 5e-19 >seq2439 Length=24097 Score = 159 bits (176), Expect = 3e-34 Identities = 815/1280 (64%), Gaps = 37/1280 (3%) Strand=Plus/Minus Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTA 147997 |||||| |||| |||||||| ||| ||||| ||||| ||||||||||| ||| || | Sbjct 3967 GGCAGCTGGTTTAGTGCGCAAATAATACATCCCCGTTTTGAGGCCCATTTTCCAGGCATG 3908 Query 147998 GTCGTGCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCACAAACAGATTAAACGA 148054 | || | || | |||| | || | || | | ||| | | || || || Sbjct 3907 GAAATGAATTGAAG---TGAGTTTCCCATAGTTAGGTTCTGCCACGTAAATGTTGAATGA 3851 Query 148055 CTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTT 148114 || || || |||||||| || ||||||||||| ||||||||||| | | || | ||| Sbjct 3850 TTGACTTTGATCAATGAAGGCCCCACGGTCAGCTGCCATTTCAATCATTGTTTTCACCTT 3791 Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTG 148174 || ||||| | || || |||| | |||| || ||||| | || ||| Sbjct 3790 GATTTCCCACACGGTTTTATACAACTCACGAATATCCTCAGGAATTTCCAGAATATTCTG 3731 Query 148175 CACCGAGCCGCGGTGCGCAAA-AATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCT 148233 ||| ||||| || |||| ||| || || |||||| || | | ||| || | Sbjct 3730 CACAGAGCCATTGTTGGCAATTAATTTG-TTCTTCATTTCATCATTCCAAAGGCGTAGTT 3672 Query 148234 CGATCAGGTCATCGATCAGATA-CTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 | || || | | ||||| ||| || ||||| || || || || | || || || Sbjct 3671 CAGAGAGATCCTTTAACAGATGGCTG-TTAACCACTTGGAATTCCCCAGAAAGAACACGA 3613 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || |||| ||| || | ||||| || || || || ||||| | ||| || || Sbjct 3612 CGGGTGTACATATTGGATGTGTAGGGTTCGAAGGATTCATTATTGCCAAGAATTTGAGCC 3553 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT- 148411 || | ||||| ||||| || || ||||| || || || | ||| | | || Sbjct 3552 GTAGAAGCCGTTGGCATTGGAGCCACAAGCAGGGAATTTCGAACACCATGCTGAGCAATC 3493 Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 ||||| ||||| | |||| | ||| || || || | |||||||| ||||| Sbjct 3492 TTTGC-CTTCAATTCATCCCAATTCCAAAGATCCGTTGGCTTTCTATTCCACATATCGTA 3434 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||||||||| || ||| | || || || | ||||| || |||||| || | | Sbjct 3433 CTGCAGAATTCCCTTGCTTACTGGACTTCCATTGTACGTCTCATATGGTCCGAGCTTCTC 3374 Query 148532 CGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 || || || || || ||||| || || || |||||||| || || ||||| ||| Sbjct 3373 AGCGAGCTCACAACTAGCCTCAAGAGCTCCATAGTAAATGGTTTCAAAGATTTGTTGGTT 3314 Query 148592 GAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAG 148651 ||| | || | ||| || || || | |||| | | | || || || || Sbjct 3313 GAGTTTCTTGGCTTCTTTGCTATCATATGGGAGGCGCATGAGAATGTAAGCATCCGCTAG 3254 Query 148652 GCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC-GCTCTCGA 148710 || || || || | ||||| || | |||| || |||||| ||| ||| ||| Sbjct 3253 ACCTTGAACTCCAATTCCAATCGGTCTGTGTCGCATATTGGAG---CGCTTTGCT-TCGG 3198 Query 148711 GC---GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 | || |||| |||| ||| || | |||| |||||||| || | ||| || | Sbjct 3197 GTACGGGGTAGTAGTTGATGTCTATAACTTTGTTGAGATTGCGTGTGACAATCTTCGTGA 3138 Query 148768 TTCTGCGCAGCAATTCAAAATCGTACTTGTCATC------TACGATGCATCGGTTCACGG 148821 ||| |||||||| ||| | | ||| ||| | ||| || | | Sbjct 3137 CGGACTTTAGCTTCTCAAAATCATACGTCTTATCGGGCAGTACAAA-CATA--TTAAGTG 3081 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 | || || |||| ||||||||| || |||||||| || || || |||||||||| Sbjct 3080 CAATTGATGCTAAATTGCACACAGCAATCTCATCCTTGGACGAATATTCAACGATCTCGG 3021 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 ||| || ||||| || || || | |||| ||||| ||||| | ||| || | Sbjct 3020 TGCAGAGGTTGCTACAGCGAATTGTACCAATATTCTGCTGATTACTCTTACGGTTACATG 2961 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACC 148998 |||||||||||||||| ||||| || ||||| || || ||| | ||| |||| Sbjct 2960 CGTCCTTGTACAGCATATACGGCGTTCCCGTTTCTACTTGACTTTGAATGATGGCAAACC 2901 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGC-TCGTATAAAGTA 149057 | || || | || | || | | ||| || ||| |||| ||||| || Sbjct 2900 AA---AGATCTCGAGCTGGTACCTTACGAATGTACTGA-CCTTCTGCTTCGTACTTTGTG 2845 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 |||| | || | || || ||||||| | || |||||||||| |||||| Sbjct 2844 TACAATTTATTAAATTCTTCACCCCAGCAATCAAACAATCCAGGGCACTTGTTAGGGCAC 2785 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 ||||| ||| | || ||| || | || |||| |||||| | ||| || | ||||||| Sbjct 2784 ATGAGACTCCATTCACCATCCTCGGAGACACGCTGCATAAATAAATCAGGAATCCAGAGC 2725 Query 149178 GCGTACATGAGGTCGCGCGC 149197 || || | ||| || || || Sbjct 2724 GCATAGAAGAGATCTCGTGC 2705 >seq825 Length=38805 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||||||| ||||| || ||||| ||| | ||| | ||||| ||| Sbjct 11891 AAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCTAGC 11950 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | ||||| |||||||| || |||||||| || || || || ||| Sbjct 11951 TGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAGGGATTCCCTCTTTATCC-TGAAT 12009 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | |||| || || | ||| || || || | ||||| ||| || || Sbjct 12010 TTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGACCTCAAGGGTGATGGTCTTCCC 12069 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| |||||||||||||| Sbjct 12070 CGTGAGAGTTTTCACGAAAATCTGCAT 12096 >seq79 Length=216850 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 || ||||||||||| ||| |||||||| ||||| || || ||||| ||||| ||||| Sbjct 76194 AGACACGCAAAGTCACAGTGGAGGCCCTCATCGCGTGAAATGAGCTCATTGCTGAACGTG 76253 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||||||||| | ||||| |||| || | ||| ||||| || ||| Sbjct 76254 AGTCCGGGCATGATGCCGCGTGACTTGAGCCAGAAGATTGAGGCGAAGCTACCGCTGAAG 76313 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||||| || |||||||| | | | ||| | || | || || |||| Sbjct 76314 AAAATCCCCTCAACTGCCGCAAAGGCAATGACCCTTTCGCCGAAATTTGCTTCCTGGCTG 76373 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGA 120874 | ||||||| | ||||| |||||||| || ||| ||||||| | ||||| Sbjct 76374 GCAATCCACTGGAGTGCCCAATCGGCCTTCTTCTTCACACACGGCAGCGTCTCGA 76428 >seq24 Length=280856 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || ||||| |||||||||||| | ||| | |||||||| |||||||| Sbjct 39546 GGTAGATTCCTTCTGAATATTGTAATCGGAGAGCGTACGCCCATCCTCGAGTTGCTTGCC 39487 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || || ||||| |||||||| ||||||| ||| Sbjct 39486 AGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTT 39427 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||| || | ||||| || || | |||| ||| || || || | ||| Sbjct 39426 CACATTCTCAATCGTATCAGATGGCTCGACCTCAAGAGTGATGGTCTTACCCGTTAAAGT 39367 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 39366 CTTCACAAAGATCTGCAT 39349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483351114891680