Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq845 140 3e-28 seq1371 127 2e-24 seq79 109 4e-19 >seq845 Length=74752 Score = 140 bits (154), Expect = 3e-28 Identities = 395/601 (66%), Gaps = 12/601 (2%) Strand=Plus/Plus Query 19220 ATTGGAATGT--GAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTT 19277 ||||| || | |||||| || |||||| || || || ||||| || ||||| Sbjct 9396 ATTGGGATTTCGGAAAGA--TGGGAATTGGTGGTCTGGACAAGGAGTTCAATGCCATCTT 9453 Query 19278 TCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAA 19337 | | || |||| ||||||||||| | | || || | | || |||| || || Sbjct 9454 CAGGCGCGCCTTTGCATCGCGTGTTTTCCCACCGGAACTCGTAGAGCAGCTGGGCTGCAA 9513 Query 19338 ACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAG 19397 || || ||| ||||||| ||||| || ||||| |||||||| | || || | Sbjct 9514 GCACGTCAAGGGAATTTTGCTGTATGGCCCTCCGGGAACGGGAAAAACTCTCATGGCACG 9573 Query 19398 AGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTT 19457 | | || | ||| | || | || ||||| ||||| ||||| || | || || Sbjct 9574 ACAGATTGGCAAAATGCTCAATGCACGGGAGCCCAAGATTGTCAATGGCCCACAGATTTT 9633 Query 19458 AAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGA 19517 |||| || || ||| | || || | ||| | |||||||||||||| || || || || Sbjct 9634 GGATAAGTACGTGGGTGAGTCTGAGGCCAATATTCGACGTTTGTTTGCCGAAGCGGAGGA 9693 Query 19518 AGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGA 19577 || | || || | || | ||| ||| | ||||||||||| | || ||| | || Sbjct 9694 GGAGGAGAAGCGACTCGGCCCCAATAGTGGACTCCACATTATAATTTTCGACGAAATCGA 9753 Query 19578 CGCAATCTGTAAGCAAAGAGGTTCT---GGTGTAAAT---GGAGTACATGACACTGTTGT 19631 || || || ||| | |||||| | | |||| || || || ||||| || || Sbjct 9754 TGCCATTTGCAAGGCTCGTGGTTCTGTGGCAGGAAATAGCGGTGTGCACGACACCGTGGT 9813 Query 19632 CAATCAACTCCT-GTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTG 19690 ||||| | || | ||| ||| || |||||| | || ||||| ||||| | || |||| Sbjct 9814 GAATCAGTTGCTCGCCAAGATT-GATGGTGTTGAGCAGCTGAACAATATCCTCGTGATTG 9872 Query 19691 GCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAA 19750 | ||||| ||||||| ||| | || ||| ||| || | || || ||||| ||||| Sbjct 9873 GTATGACAAATAGACGGGATATGATTGACGAGGCCCTAATGCGTCCGGGTCGATTGGAGG 9932 Query 19751 TAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATA 19810 | | || || ||| ||||| |||| ||||| | ||||| | ||||| || | Sbjct 9933 TGCAAATGGAGATTGGGCTACCCAATGAGGCAGGACGCTTCCAAATTCTCAACATTCACA 9992 Query 19811 C 19811 | Sbjct 9993 C 9993 >seq1371 Length=16595 Score = 127 bits (140), Expect = 2e-24 Identities = 255/373 (68%), Gaps = 4/373 (1%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTC 41107 ||||| | ||||| ||||| | | ||| || || ||||| |||||| || || || Sbjct 8862 ATGGCGCTCCCACCCTGTCACTGCCT-TGTACAATTCTACGTGGCCAATGGAGAGCTCTC 8804 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 || ||| |||||||| | |||| ||||||||||| ||||| || || ||||| || || Sbjct 8803 GTGCCAAATGTATCAACGTTCAGCCGACATGGGACTGGGGGTACCATTCAACATTGCCAG 8744 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGT 41227 |||||||| ||||| |||||||| || | || || | || || || || || || Sbjct 8743 CTATGCTCTCCTCACACGAATGATTGCCCAAATCACAGATCTCAAGCCAGGAGACTTCGT 8684 Query 41228 TCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACT 41287 ||||| | || |||| ||| | ||| | |||||| |||| || | || ||||| Sbjct 8683 GCACACCCTCGGTGATGCTCATGTCTACTTGAATCACGTAGAACCCCTCCGGGAGCAACT 8624 Query 41288 GACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACG-CGCTGTTGAAAACATTG 41346 || || | || | ||| || ||||| || | ||| || ||| |||||||||| Sbjct 8623 GAAGCGCACCCCAAAACCCTTCCCAACACTCCACATTGCCCGACGC-CCAGAAAACATTG 8565 Query 41347 ATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACA 41406 | ||||| | || || |||| | || | |||| || | || ||||| || Sbjct 8564 AAGATTTCACATTTGAGGACTTTGAGCTACGCAACTACAGCCCCCATCCGAAAATTGCCA 8505 Query 41407 TGGACATGTCTGT 41419 |||| ||| |||| Sbjct 8504 TGGAGATGGCTGT 8492 >seq79 Length=216850 Score = 109 bits (120), Expect = 4e-19 Identities = 224/333 (67%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| || || || |||||||| || || | ||| | ||||||||||| || |||| Sbjct 76780 TTTGTTGTCTTCCCCATTCAATACCACGATGTGTGGGAGATGTACAAAAAGGCCGAGGCC 76721 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 ||||||||||||| || ||||| || | | || | | || |||| ||| || Sbjct 76720 TCATTTTGGACAGTTGAGGAAGTAGACCTATCCCGGGATATGGATCACTGGAATGCTTTG 76661 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || |||| | || || || |||| || ||||| || ||| ||| Sbjct 76660 AAGGATTGCGAAAGGAAATTCATTAGCCACGTCCTGGCATTCTTTGCGGCATCCGATGGG 76601 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || || ||||| ||| | || || || || || || ||| | |||| |||||| Sbjct 76600 ATTGTAAATGAGAATCTCGTGGAGCGCTTCAGTCAGGAGGTGCAAATCACAGAGGCACGA 76541 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 | || ||||| || || |||||||| || ||| | ||| |||||||||||| | || Sbjct 76540 TTCTTCTATGGCTTCCAGATTGCCATGGAGAATGTACATAGCGAAATGTACAGTTTGCTC 76481 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || ||||||||||| ||| ||| |||||| Sbjct 76480 ATTGATACGTACATACGGGATCCGCAGGAGAAG 76448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397400139049660