Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq24 123 2e-23 seq1176 122 8e-23 >seq24 Length=280856 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| | || || ||| | || |||||||| || || || || Sbjct 39349 ATGCAGATCTTTGTGAAGACTTTAACGGGTAAGACCATCACTCTTGAGGTCGAGCCATCT 39408 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || ||| || || ||||| || ||||| || || || || Sbjct 39409 GATACGATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 39468 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || ||||| ||| | || || | || | ||||||||||| Sbjct 39469 CAGCGTTTGATCTTTGCTGGCAAGCAACTCGAGGATGGGCGTACGCTCTCCGATTACAAT 39528 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || |||| ||| | ||| | ||| | || |||||||| Sbjct 39529 ATTCAGAAGGAATCTACCT--CATCTCGTTCTCCGTCTTCGTGGTGGCAT 39576 >seq1176 Length=25388 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || || || || || || ||||| Sbjct 17492 ATGCAGATCTTTGTGAAAACACTCACAGGGAAGACGATCACCCTCGAGGTTGAGCCGTCA 17433 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| |||||||| |||||||||||||| || || ||||| Sbjct 17432 GATACCATCGAGAATGTAAAAGCTAAAATTCAGGACAAAGAAGGCATTCCGCCAGATCAG 17373 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | || | ||||| |||||| Sbjct 17372 CAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAAGATGGGCGTACATTGTCCGACTACAAC 17313 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||| || || Sbjct 17312 ATCCAGAAGGAATCAAC 17296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434855706512640