Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lutzomyia_20longipalpis_20[genbank_20GCA_5F000265325.1_202012-06-11] 11,532 sequences; 154,229,266 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1176 152 1e-31 seq825 127 5e-24 seq24 122 2e-22 >seq1176 Length=25388 Score = 152 bits (168), Expect = 1e-31 Identities = 160/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||||||||| || ||||| || |||| ||||| |||| ||| || Sbjct 17271 ACGAAGACGGAGCACAAGGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGT 17330 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| ||||||||||| |||||||| || || || || || |||||||| || Sbjct 17331 ACGCCCATCTTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGCGGAATGCC 17390 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||| || || ||| || || ||| |||||||| ||||| | || || || | Sbjct 17391 TTCTTTGTCCTGAAT-TTTAGCTTTTACATTCTCGATGGTATCTGACGGCTCAACCTCGA 17449 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||| || || | ||||| Sbjct 17450 GGGTGATCGTCTTCCCTGTGAGTGTTTT 17477 >seq825 Length=38805 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||||| ||||| || || |||| ||||| |||| | || Sbjct 11875 ACGAAGACGCAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 11934 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| |||||||||||||| || ||||| || || || || || || || || || Sbjct 11935 GCGCCCATCCTCTAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGATCCGGAGGGATTCC 11994 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || || || || || ||| ||| ||| || || || |||| ||| || || | Sbjct 11995 CTCTTTATCCTGAATTTTCGCCTTGACATTTTCAATTGTATCCGAGGGTTCGACCTCAAG 12054 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | |||||| | ||| | |||||||| Sbjct 12055 GGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAAATCTGCATTTT 12099 >seq24 Length=280856 Score = 122 bits (134), Expect = 2e-22 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || || ||||| || || | ||||||||||| | || Sbjct 39568 ACGAAGACGGAGAACGAGATG-AG-GTAGATTCCTTCTGAATATTGTAATCGGAGAGCGT 39511 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| || || ||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 39510 ACGCCCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATGCC 39451 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||||||| ||||||| || || || || || | || || || | Sbjct 39450 CTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATCGTATCAGATGGCTCGACCTCAAG 39391 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||||| ||||| ||||| ||||| || | || | |||||| || Sbjct 39390 AGTGATGGTCTTACCCGTTAAAGTCTTCACAAAGATCTGCATTCTA 39345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192354999043208