Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq625 107 2e-18 seq5251 87.8 2e-12 seq6746 82.4 8e-11 >seq625 Length=71657 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 119885 CCATCTA-ACTCGTATTTATCGTTTAAGTAGATACAGACGCTTAACGCACTTTCAGGAGT 119943 ||||| | ||| |||||| || ||||| || ||| ||| |||||| ||| ||| | Sbjct 54092 CCATCCATACT-GTATTTGTCATTTAAATAAATAGAGATTTCTAACGCTTGTTCTGGACT 54150 Query 119944 CTCGCTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACC 120003 | | ||||||| | |||||| || ||||| ||||| ||||| ||||||||||||| || Sbjct 54151 TTGGGTCCATTCTAATATTTTCTTTGCCCAATACATTCGTAAAAATCCATGCATTTTGCC 54210 Query 120004 TTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 |||| | |||||||| ||| || || |||||||| Sbjct 54211 TTCAAGCACCATTTGCTTTTGGGCAGCATTCCATAA 54246 >seq5251 Length=56147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 17216 TTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATG 17275 ||||| || | || ||||||||||||| || | | || ||||| || || |||| Sbjct 14850 TTTTCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACA 14909 Query 17276 TTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACG 17335 || |||||||| || || ||||| || || ||| |||||| | | ||| ||||| Sbjct 14910 TTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGA 14969 Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAAT 17395 | ||| ||||| | | || ||||| || ||||| || || || ||||| || || Sbjct 14970 TTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAG 15029 Query 17396 ATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 || || ||| || | |||||| || ||| | ||| Sbjct 15030 ATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGA 15065 >seq6746 Length=106662 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 ||||||||| || ||||||||||| || |||||||||||| | ||||||||| || Sbjct 26008 TAATCTATCAGCGACAAATTCTATGTACGTCGTCATTAATTCGCAATCCATTCCTATCAG 25949 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | ||||| | | ||| ||| ||||| ||||||||| | || ||||| |||||| Sbjct 25948 AGACACCGGCAAACCTTTGGTCGAAAATTCTTGCTCTATTATCACAGCTTCGCGAATAAT 25889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517462216934520