Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq6746 170 1e-37 >seq6746 Length=106662 Score = 170 bits (188), Expect = 1e-37 Identities = 245/343 (71%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 101750 TTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACT 101809 || || | |||||| ||||| |||| | | || || || || || || || || || Sbjct 3790 TTTGTAATATGAGCGATCATATAAGTGAGCAAGGAGTAACTTGCTATATTGAAAGGTACA 3849 Query 101810 CCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACA 101869 |||| ||||||||||| || | |||||||| |||| ||||||| |||| | ||| Sbjct 3850 CCTAGACCCATATCAGCAGAGCGTTGATACATGAGACACGAAAGCTCACCATTAGCTACA 3909 Query 101870 TAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTC 101929 |||||||| ||| |||||| || || || |||||||||| | || | |||| Sbjct 3910 TAAAATTGCACTAAGCAATGACACGGAGGTAATGCCATTTTAGGTAAATCAACAGGATTC 3969 Query 101930 CAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGT 101989 || ||||| | | ||| |||||||| |||| || ||||| || ||| || | | | Sbjct 3970 CAGGCACATAAAATCATTCTTCTATCGTTAGGATTGGTTTTGATCATATTTATTATATTT 4029 Query 101990 TTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCC 102048 | ||||| ||||| |||| || | ||||| ||| | | | |||| || || ||||| Sbjct 4030 TGCAATTGATCAACGCCTTGGCCAGTGTAATCGGCGAAC-ATATCTTTGTACTCGGCTCC 4088 Query 102049 GAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCT 102091 |||||||||||||| |||||||| | ||| || ||||| ||| Sbjct 4089 AAAATGCCTCCACTGGAATCCATAAATAGGACCGAGATCCCCT 4131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361194452968139