Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6746 138 1e-27 seq5251 129 7e-25 >seq6746 Length=106662 Score = 138 bits (152), Expect = 1e-27 Identities = 212/300 (71%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTT 54036 || ||||| || |||| |||||||| | |||| | || | | |||| | ||| | Sbjct 29665 AAACCAGGGCAGTCATTTGGACACATAAGACTCCACGTTTGGTTA-CTTTCAACACGTCT 29607 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 ||| || ||||||||||| ||||| ||||||| |||||| ||||| || ||||| Sbjct 29606 CATGAATTCGTCAGGAATCCATAGAGCGATAAATAAATCTCTACATCTATACTCTTCGTT 29547 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || | |||| | | || | ||| | | |||||| | |||||| ||||| || || Sbjct 29546 ACCGGAATTCATCCGTAATTCTAAAAACTCGAAAATATCCGTATGCCAGGGTTCTAAATA 29487 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 |||| | | | || || | |||||| ||||| ||||| | |||||| || |||| ||| Sbjct 29486 GATGGCGAAAGCGCCTGGTCTTTTGTTGCCTCCTTGATCGACGTATCTCGCAGTGTAATT 29427 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 || ||| | ||| |||| || |||||| ||| | ||||| || || || ||||| || Sbjct 29426 GTAGACTTGAAGCATAGGAACAAGACCATTTGATACGCCATTCGTTCCAGAAATATAACT 29367 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 52910 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 52969 ||||| ||||| || || || | ||| | | |||| |||||| || || ||||| ||| Sbjct 31158 TAACTTGGATCGGCCATGTGAACATTTAAACTTTGAGATTGATCAATAAAAGCTCCTCTG 31099 Query 52970 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 || || |||||||| | | ||||||||| ||||||||||| |||||||||| Sbjct 31098 TCGGCGGCCATTTTCAACACAGTCTTTTGTTTAATTTCCCAAACGGTTTTATAAA 31044 >seq5251 Length=56147 Score = 129 bits (142), Expect = 7e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 24384 TTTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443 ||||||| ||| || | ||| ||||| ||||| ||||||||| || ||||| | Sbjct 14850 TTTTCATGGGGATCCTTTATATACGTATCTATCAATTTACTATACATCTCAGAATGTACA 14909 Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATA 24503 ||||| ||||| ||||| ||||| |||||| |||| || ||||||| || |||||| | Sbjct 14910 TTTTCCATGGCGATTTGGAATCCATAGAAAAATCTGGCTTCGGTAACTTGCACTTCTTGA 14969 Query 24504 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 24563 || ||||| | || || || || || || || ||| |||||||||||| || || Sbjct 14970 TTGAAACGTTCAACCAAGTTCTCGTTGACAATGCCATCAGAGGCTGCAAAAAAGGCTAAG 15029 Query 24564 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 24619 | || ||||| | |||||| |||||| | || | | |||||| ||| ||| Sbjct 15030 ATGTGGGAAATAAATTGTTTTTCTTCTGGTTTCAGACTTTCCCAATCTCTGAAATC 15085 Score = 113 bits (124), Expect = 5e-20 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || |||||||| || || | |||||||||||| || | || | Sbjct 14550 CCTCATCTCTTGATATCAATTCGTTACTGAAAGTTAATCCGGGCATTAGACCTCTTTTCT 14609 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || ||||| || || ||||| || || ||||| | Sbjct 14610 TCAGCCAAAATATTGCAGCAAAACTACCGGAAAAAAAGATACCTTCAACAGCTGCAAATG 14669 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGG 24333 ||| | |||||| ||| || || | |||| ||||| | ||||||||| | Sbjct 14670 CAACGATTCTTTCGCCAAAAGTAGCTTTTTCATCAGCAATCCATCTCAAAGCCCAATCTG 14729 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 |||| || || ||||| |||||||| || || ||||| ||||| Sbjct 14730 CCTTTTTCTTAACACATGGCATTGTTTCAATCGCATTGAAGAG 14772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593625944028720