Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq5713 125 6e-24 seq4379 125 6e-24 seq11230 89.7 4e-13 >seq5713 Length=114977 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||||||||| || || ||||| ||||| |||| |||||| Sbjct 41231 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41290 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| ||||||||||| | ||| |||||| Sbjct 41291 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 41350 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || ||||| || ||||||||||| |||||| | |||| | ||||||| ||| Sbjct 41351 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41410 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| ||| | || |||| | ||||| ||||||| Sbjct 41411 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41457 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| ||||||| ||||| || |||||||| || |||| ||||| Sbjct 40771 AAAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAACC 40830 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 || || | | || | || |||||| ||||| ||||| | ||| ||| Sbjct 40831 AAGCGATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGA 40890 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| ||| | || ||||| || || |||||| |||||||| | |||| | ||||||| Sbjct 40891 TCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCGATTA 40950 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| || || ||||| ||| | || |||| | ||||| ||||||| Sbjct 40951 CAATATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41001 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| || ||||| ||||| |||| |||||| Sbjct 41003 ATGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41062 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| |||||| |||||||| || | ||| |||||| Sbjct 41063 GATACCATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCAG 41122 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || ||||| || ||||||||||| |||||| | |||| | ||||||| ||| Sbjct 41123 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41182 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| ||| | || |||| | ||||| ||||||| Sbjct 41183 ATCCAAAAGGAATCGACTTTACATTTGGTACTTCGATTGAGAGGAGG 41229 >seq4379 Length=409 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||||||||| || || ||||| ||||| |||| |||||| Sbjct 16 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 75 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| ||||||||||| | ||| |||||| Sbjct 76 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 135 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || ||||| || ||||||||||| |||||| | |||| | ||||||| ||| Sbjct 136 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 195 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| ||| | || |||| | ||||| ||||||| Sbjct 196 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 242 >seq11230 Length=416 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || || ||||||||| | ||||| || || ||||| ||||| Sbjct 178 GACAAAGAAGGCATCCCACCCGACCAACAAAGATTGATCTTCGCCGGAAAACAGTTGGAA 237 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| || || |||||||||||||| ||||| || ||||| |||||||| Sbjct 238 GATGGCAGAACGTTGAGTGACTACAATATTCAGAAAGAATCCACCCTTCATTTGGTGTTA 297 Query 29175 CGATTACGAGGAGG 29188 || |||| || || Sbjct 298 CGTCTACGTGGTGG 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428268714973295