Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq5713 125 6e-24 seq4379 125 6e-24 seq11230 89.7 4e-13 >seq5713 Length=114977 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||||||||| || || ||||| ||||| |||| |||||| Sbjct 41231 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41290 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| ||||||||||| | ||| |||||| Sbjct 41291 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 41350 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || ||||| || ||||||||| | |||||| | |||| | ||||||| ||| Sbjct 41351 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41410 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||| | || |||| | ||||| ||||||| Sbjct 41411 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41457 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || ||| ||||||| ||||| || |||||||| || |||| ||||| Sbjct 40771 AAAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAACC 40830 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 || || | | || | || |||||| ||||| ||||| | ||| ||| Sbjct 40831 AAGCGATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGA 40890 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| ||| | || ||||| || || ||||||||||||||| | |||| | ||||||| Sbjct 40891 TCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCGATTA 40950 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| ||||| ||||| ||| | || |||| | ||||| ||||||| Sbjct 40951 CAATATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41001 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| ||||| || ||||| ||||| |||| |||||| Sbjct 41003 ATGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41062 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | || |||||| |||||||| || | ||| |||||| Sbjct 41063 GATACCATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCAG 41122 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || ||||| || ||||||||| | |||||| | |||| | ||||||| ||| Sbjct 41123 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41182 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| ||| | || |||| | ||||| ||||||| Sbjct 41183 ATCCAAAAGGAATCGACTTTACATTTGGTACTTCGATTGAGAGGAGG 41229 >seq4379 Length=409 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||||||||| || || ||||| ||||| |||| |||||| Sbjct 16 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 75 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| ||||||||||| | ||| |||||| Sbjct 76 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 135 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || ||||| || ||||||||| | |||||| | |||| | ||||||| ||| Sbjct 136 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 195 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| ||| | || |||| | ||||| ||||||| Sbjct 196 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 242 >seq11230 Length=416 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || || ||||||||| | ||||| || || ||||| |||||| Sbjct 178 GACAAAGAAGGCATCCCACCCGACCAACAAAGATTGATCTTCGCCGGAAAACAGTTGGAA 237 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| || || ||||||||||| || ||||| || ||||| |||||||| Sbjct 238 GATGGCAGAACGTTGAGTGACTACAATATTCAGAAAGAATCCACCCTTCATTTGGTGTTA 297 Query 25248 CGATTACGAGGAGG 25261 || |||| || || Sbjct 298 CGTCTACGTGGTGG 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410732270113046