Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9555 125 7e-24 seq11230 122 9e-23 seq11905 107 2e-18 seq9601 104 2e-17 seq5251 100 3e-16 seq5713 98.7 1e-15 >seq9555 Length=64705 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||||||||| || ||||| ||||| | || ||||| | || Sbjct 30765 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 30824 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || || | |||||||| |||||||| | ||||| Sbjct 30825 GACACAATCGAAAACG-TCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCA 30883 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || |||||| |||| || | | || | | |||||||| Sbjct 30884 ACAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAA 30943 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| |||| || || | || ||||| Sbjct 30944 CATCCAAAAGGAATCCACCCTTCACTTGGTATTGCG 30979 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || ||||| ||||| ||||| | || ||||| | | Sbjct 29954 ATGCAAATTTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCCGTCG 30013 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || || | |||||||| || ||||| | ||||| Sbjct 30014 GACACGATCGAAAACG-TCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCGACCA 30072 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||| || || |||| | || | | ||||||||| Sbjct 30073 ACAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 30132 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || || |||| || || |||| || || Sbjct 30133 CATCCAAAAAGAATCCACCCTTCACTTAGTATTACG 30168 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| || ||||| ||||| ||||| | || ||||| | Sbjct 29722 AAACATGCAGATCTTCGTGAAAACTCTTACGGGAAAAACGATCACTTTGGAAGTCGAGCC 29781 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | ||||| |||||| || || | |||||||| || ||||| | | Sbjct 29782 GTCGGACACGATCGAAAACG-TCAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCCG 29840 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| ||| || | |||| ||| || ||||| || || |||| | || | | ||||| Sbjct 29841 ACCAACAAAGATTGATCTTCGCCGGAAAACAACTCGAAGACGGAAGAACGTTGAGCGACT 29900 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||| || || |||| || || |||| || || Sbjct 29901 ACAACATCCAAAAAGAATCCACCCTTCACTTAGTATTACG 29940 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || ||||| || || | || || || | || Sbjct 30537 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 30596 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | ||||| | |||||||| || ||||| | ||||| Sbjct 30597 GACACAATCGAAAACG-TCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCA 30655 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || || || || |||| | || | | ||||||||| Sbjct 30656 ACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 30715 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || || |||| || || |||| || || Sbjct 30716 CATCCAAAAAGAATCCACCCTTCACTTAGTATTACG 30751 >seq11230 Length=416 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||||||||| || ||||| ||||| | || ||||| | || Sbjct 85 ATGCAAATTTTCGTGAAAACGCTCACCGGAAAAACGATCACTTTGGAAGTCGAGCCGTCC 144 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || || | |||||||| |||||||| | ||||| Sbjct 145 GACACAATCGAAAACG-TCAAGGCTAAGATCCAAGACAAAGAAGGCATCCCACCCGACCA 203 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || |||||| |||| || | | || | | |||||||| Sbjct 204 ACAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCAGAACGTTGAGTGACTACAA 263 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || |||| || ||| | ||||| || Sbjct 264 TATTCAGAAAGAATCCACCCTTCATTTGGTGTTACG 299 >seq11905 Length=336 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || ||||| || || | || || || | || Sbjct 313 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 254 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | ||||| | |||||||| || ||||| | ||||| Sbjct 253 GACACAATCGAAAACG-TCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCA 195 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || || || || |||| | || | | ||||||||| Sbjct 194 ACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 135 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || || |||| || ||| | ||||| || Sbjct 134 CATCCAAAAAGAATCCACCCTTCATTTGGTGTTACG 99 >seq9601 Length=294 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || ||||| || || | || || || | || Sbjct 271 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 212 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | ||||| | |||||||| || ||||| | ||||| Sbjct 211 GACACAATCGAAAACG-TCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCA 153 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || || || || |||| | || | | ||||||||| Sbjct 152 ACAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAA 93 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || || |||| || || |||| || || Sbjct 92 CATCCAAAAAGAATCCACCCTTCACTTAGTATTACG 57 >seq5251 Length=56147 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || || || || || ||||| || || || | ||||| || ||||| || | ||| Sbjct 14769 TTCAATGCGATTGAAACAATGCCATGTGTTAAGAAAAAGGCAGATTGGGCTTTGAGATGG 14710 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || || | | | || | || ||||| | | || || || || || || || || Sbjct 14709 ATTGCTGATGAAAAAGCTACTTTTGGCGAAAGAATCGTTGCATTTGCAGCTGTTGAAGGT 14650 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 |||| ||||| || ||||| || || ||||||||||| |||||| | || || |||||| Sbjct 14649 ATCTTTTTTTCCGGTAGTTTTGCTGCAATATTTTGGCTGAAGAAAAGAGGTCTAATGCCC 14590 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || | |||||||| ||||| | || || || || |||| Sbjct 14589 GGATTAACTTTCAGTAACGAATTGATATCAAGAGATGAGG 14550 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 116762 GCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG 116821 |||||||| || ||| || ||||| ||||||||||| |||| || |||||| ||| Sbjct 15025 GCCTTTTTTGCAGCCTCTGATGGCATTGTCAACGAGAACTTGGTTGAACGTTTCAATCAA 14966 Query 116822 GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTG 116881 || ||||| || |||| || | | ||||| || || || ||||||||||| || || Sbjct 14965 GAAGTGCAAGTTACCGAAGCCAGATTTTTCTATGGATTCCAAATCGCCATGGAAAATGTA 14906 Query 116882 CACTCGGAAATGTAT 116896 || || || |||||| Sbjct 14905 CATTCTGAGATGTAT 14891 >seq5713 Length=114977 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| ||||| | || || ||||||||||| |||| |||||| Sbjct 40770 GAAAAATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAAC 40829 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | ||| | | | | | | || | ||||||| || || || || || ||| | | Sbjct 40830 CAAGCGATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAG 40889 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | |||||||| ||||||| ||| || ||||| |||| || | | || || ||| | Sbjct 40890 ATCAGCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCGATT 40949 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| ||||| || || | || | ||| | || | || ||||| || || Sbjct 40950 ACAATATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGG 41001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515136191746640