Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq6746 187 2e-42 >seq6746 Length=106662 Score = 187 bits (206), Expect = 2e-42 Identities = 246/336 (73%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 ||| ||||||||| |||| | | || || || || || || ||||| || ||||| || Sbjct 3798 ATGAGCGATCATATAAGTGAGCAAGGAGTAACTTGCTATATTGAAAGGTACACCTAGACC 3857 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 ||||||||| || | |||||| | |||| ||||||| |||| | |||||||| || Sbjct 3858 CATATCAGCAGAGCGTTGATACATGAGACACGAAAGCTCACCATTAGCTACATAAAATTG 3917 Query 97242 -ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCAC 97300 ||| || |||||| || || || |||||||| || | ||| | |||||| |||| Sbjct 3918 CACT-AAGCAATGACACGGAGGTAATGCCATTTTAGGTAAATCAACAGGATTCCAGGCAC 3976 Query 97301 ACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATT 97360 | | | ||||||||||||| | || || || | || |||| ||||| | | |||| Sbjct 3977 ATAAAATCATTCTTCTATCGTTAGGATTGGTTTTGATCATATTTATTATATTTTGCAATT 4036 Query 97361 GATCAACGCCTTCTCCACCATAATTGTGCTTA-AGACCTTGATATTCTGCTCCAAAATGC 97419 |||||||||||| ||| |||| | || | | | ||| || || |||||||||||| Sbjct 4037 GATCAACGCCTTGGCCAGTGTAATCG-GCGAACATATCTTTGTACTCGGCTCCAAAATGC 4095 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 ||||| ||||||||||||| ||| || || || ||| Sbjct 4096 CTCCACTGGAATCCATAAATAGGACCGAGATCCCCT 4131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346729525543730