Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12829 158 2e-33 seq6746 156 6e-33 seq625 149 9e-31 seq5713 140 5e-28 seq4379 140 5e-28 seq11905 123 4e-23 seq9601 105 1e-17 seq9555 105 1e-17 seq11483 100 4e-16 >seq12829 Length=36573 Score = 158 bits (174), Expect = 2e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || || || || ||||| |||||| | || ||||| | | Sbjct 35294 ATGCAAATCTTTGTAAAAACGCTCACCGGTAAAACAATAACTTTGGAAGTTGAACCTTCT 35353 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| |||| ||| | |||||||||||||||||||||||||| || || || |||||| Sbjct 35354 GATTCAATAGAAAATGTGAAACAGAAAATTCAAGATAAAGAAGGGATTCCTCCAGATCAA 35413 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | |||||||| |||||||| |||||||| | || || ||| |||||||||| Sbjct 35414 CAGCGTTTGATTTTTGCCGGAAAACAGCTAGAGGATGGGCGTACTTTATCAGATTATAAT 35473 Query 124719 ATTCAAAAAG 124728 |||||||||| Sbjct 35474 ATTCAAAAAG 35483 >seq6746 Length=106662 Score = 156 bits (172), Expect = 6e-33 Identities = 242/345 (70%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 205441 TTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACA 205500 || || | ||| || ||||||||||| | || ||||| || | ||| || |||||| Sbjct 3790 TTTGTAATATGAGCGATCATATAAGTGAGCAAGGAGTAACTTGCTATATTGAAAGGTACA 3849 Query 205501 CCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATT 205560 |||| |||||||||||| || | ||||||||| |||| | ||| | | |||| | Sbjct 3850 CCTAGACCCATATCAGCAGAGCGTTGATACATGAGACACGAAAGCTC---ACCATTAGCT 3906 Query 205561 ACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGA 205620 |||| |||||| || || |||||||| || |||| |||| || | ||| | |||| Sbjct 3907 ACATAAAATTGCACTAAGCAATGACACGGAGGTAATGCCATTTTAGGTAAATCAACAGGA 3966 Query 205621 TTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATA 205680 |||||||| ||| || || ||||| | ||| || |||| || ||||||| ||| Sbjct 3967 TTCCAGGCACATAAAATCATTCTTCTATCGTTAGGATTGGTTTTGATCATATTTATTATA 4026 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 | | |||||||||| ||||| || |||| | |||||| | || | || Sbjct 4027 TTTTGCAATTGATCAACGCCTTGGCCAGTGTAATCGGCGAACATATCTTTGTACTCGGCT 4086 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 |||||||| | ||| || || ||||||| ||||| | ||| ||| Sbjct 4087 CCAAAATGCCTCCACTGGAATCCATAAATAGGACCGAGATCCCCT 4131 >seq625 Length=71657 Score = 149 bits (164), Expect = 9e-31 Identities = 156/208 (75%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 202852 AATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATC 202911 |||||| |||||| ||||||| |||||||| ||||| ||||| ||| ||||| || Sbjct 54057 AATTGA--ACATAC---CAACATAACCATTTGGGTCACGACCATCCATACTGTATTTGTC 54111 Query 202912 ATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttt 202971 |||||||| || |||| |||||| || ||||||||||||||||| Sbjct 54112 ATTTAAATAAATAGAGATTTCTAACGCTTGTTCTGGACTTTGGGTCCATTCTAATATTTT 54171 Query 202972 tttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTG 203031 || ||||||||||||| |||| ||||||||||||| || | | | |||||| ||||| Sbjct 54172 CTTTGCCCAATACATTCGTAAAAATCCATGCATTTTGCCTTCAAGCACCATTTGCTTTTG 54231 Query 203032 TGATGCATTCCATAAATTGTCATGAGTT 203059 | ||||||||||| |||||||||| Sbjct 54232 GGCAGCATTCCATAATAAGTCATGAGTT 54259 >seq5713 Length=114977 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || |||||||| || | || | ||| | | Sbjct 41231 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41290 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| |||||||||||||||||||| || || || ||||| Sbjct 41291 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 41350 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || |||||| |||| ||| | |||| | ||||||||| Sbjct 41351 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41410 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| ||||| |||||||| | || || |||| ||||| Sbjct 41411 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTAT 41460 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || | || || ||||| || || | || | ||| ||| Sbjct 40774 AATGCAGATCTTCGTCAAAACTTTGACTGGTAAAACCATCACGCTCGAAGTCGAACCAAG 40833 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| ||||| |||||||||||||| ||||| || || || ||||| Sbjct 40834 CGATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCA 40893 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || || |||||||| || ||| | |||| | ||||| || Sbjct 40894 GCAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACTCTTTCCGATTACAA 40953 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||||||||| ||||| |||||||| | || || |||| ||||| Sbjct 40954 TATCCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTAT 41004 Score = 116 bits (128), Expect = 6e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || |||||||| || | || | ||| | | Sbjct 41459 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41518 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | ||| |||||||||||||| ||||| || || || |||||| Sbjct 41519 GATACCATCGAGAACGTGAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAA 41578 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || ||||||||||| || | |||| | ||||||||| Sbjct 41579 CAACGTCTCATCTTCGCTGGTAAACAATTAGAAGACGGAAGAACTCTCTCTGATTATAAT 41638 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 || ||||||||||| || |||| ||||| || Sbjct 41639 ATCCAAAAAGAATCCACACTGCACTTGGTGTT 41670 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || |||||||| || | || | ||| | | Sbjct 41003 ATGCAGATTTTCGTTAAAACTTTGACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 41062 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||||||||| || || || || ||||| Sbjct 41063 GATACCATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAGGGAATTCCCCCAGATCAG 41122 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || |||||| |||| ||| | |||| | ||||||||| Sbjct 41123 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 41182 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||||| |||||||| | || || |||| ||||| Sbjct 41183 ATCCAAAAGGAATCGACTTTACATTTGGTACTTCGATTGAGAGGAGGTAT 41232 >seq4379 Length=409 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || |||||||| || | || | ||| | | Sbjct 16 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCCAGC 75 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| |||||||||||||||||||| || || || ||||| Sbjct 76 GATACCATCGAGAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCCCCAGATCAG 135 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || |||||| |||| ||| | |||| | ||||||||| Sbjct 136 CAACGTCTCATCTTCGCCGGCAAACAACTAGAAGATGGAAGAACTCTCTCCGATTATAAT 195 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| ||||| |||||||| | || || |||| ||||| Sbjct 196 ATTCAAAAAGAATCGACTTTACATTTGGTACTCCGATTGAGAGGAGGTAT 245 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| |||| || |||||||| || | || | ||| ||| Sbjct 244 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATTACGCTCGAAGTCGAACCAAGC 303 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| ||||| |||||||||||||| ||||| || || || ||||| Sbjct 304 GATACCATCGAGAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAG 363 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703 ||| | || || || || || |||||||| || ||| | ||||| Sbjct 364 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGAAGAACA 408 >seq11905 Length=336 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || ||||| |||||| |||| |||| | Sbjct 313 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 254 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | ||| ||||| ||||| ||||||||||| ||||| || ||| Sbjct 253 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCCGACCAA 194 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||| ||| | || || | |||| || || || || Sbjct 193 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 134 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || | |||||||| |||||| |||| |||||||| ||| || Sbjct 133 ATCCAAAAAGAATCCACCCTTCATTTGGTGTTACGTCTACGTGGTGGTATGCAAATTT 76 >seq9601 Length=294 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || ||||| |||||| |||| |||| | Sbjct 271 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 212 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | ||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 211 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAA 152 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||| ||| | || || | |||| || || || || Sbjct 151 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 92 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || | || || || |||||| | || |||||||| ||| || Sbjct 91 ATCCAAAAAGAATCCACCCTTCACTTAGTATTACGTCTTCGTGGTGGTATGCAAATTT 34 >seq9555 Length=64705 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || ||||| |||||| |||| |||| | Sbjct 30537 ATGCAAATTTTCGTGAAAACTCTCACCGGAAAAACGATAACTTTAGAAGTTGAGCCGTCC 30596 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | ||| ||||| ||||| |||||||| || ||||| || ||| Sbjct 30597 GACACAATCGAAAACGTCAAAGCTAAAATCCAAGACAAAGAAGGGATCCCACCCGACCAA 30656 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || || || ||||| ||| | || || | |||| || || || || Sbjct 30657 CAAAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGAAGAACGTTGAGCGACTACAAC 30716 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || | || || || |||||| | || |||||||| ||| || Sbjct 30717 ATCCAAAAAGAATCCACCCTTCACTTAGTATTACGTCTTCGTGGTGGTATGCAAATTT 30774 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| ||||||||||| ||||| || |||||||| | || || || |||||| Sbjct 29810 AAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAAAGATTGATCTTCGCCGGAAAA 29869 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || | |||| || || || || || ||||||||||| || | || Sbjct 29870 CAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 29929 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||| | || |||||||| ||| || Sbjct 29930 TTAGTATTACGTCTTCGTGGTGGTATGCAAATTT 29963 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| ||||||||||| ||||| || |||||||| | || || || |||||| Sbjct 30038 AAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAAAGATTGATCTTCGCCGGAAAA 30097 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || || | |||| || || || || || ||||||||||| || | || Sbjct 30098 CAACTCGAAGACGGAAGAACGTTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 30157 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||| | || |||||||| ||| || Sbjct 30158 TTAGTATTACGTCTTCGTGGTGGTATGCAAATTT 30191 >seq11483 Length=76730 Score = 100 bits (110), Expect = 4e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || || | || ||||| || || ||||| || || | || | ||| Sbjct 50843 TACAGATGCAGATTTTCGTGAAAACACTCACGGGTAAAACAATTACCCTCGAAGTCGAAC 50902 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | || | ||| ||| | |||||||| ||||| ||||| |||||||| ||||| | Sbjct 50903 CTTCCGACTCGATTGAGAATGTCAAACAGAAGATTCAGGATAAGGAAGGTATTCCACCGG 50962 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||| || || | || || || |||||||||||||| ||| | |||| || || | Sbjct 50963 ATCAGCAGAGATTGATCTTCGCTGGAAAACAATTAGAAGATGGAAGAACCTTGTCGGACT 51022 Query 124714 ATAATATTCAAAAAG 124728 |||| |||||||||| Sbjct 51023 ATAACATTCAAAAAG 51037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755334286595200